EST details — SGN-E546946
Search information |
Request: 546946 | Match: SGN-E546946 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C194343 | Clone name: TUS-70-J5 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C107253 [cLPP-4-M16] | Trace: SGN-T175736 | EST: SGN-E363299 | Direction: 5' | Facility: TIGR |
Sequence |
Sequence Id: SGN-E546946 | Length: 906 bp (untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E546946 [] (untrimmed)
GATTGGGACCGGGCCCCCCTCGAGTTTTTTTTTTTTTTTTTTTTTTACCATGATGATATTTGAACAAATAAAAAAGTGTTACACACGAACTATGA
ATATGTATAACCAACACTCTCTAAATGTTCATCGAAACCTGAGTATAATCATCGGATAATCCTCTTGTAGAGTAGAAATCATCATCCCCATCTCC
TCGTGCCGAATTCCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGGCCGCCACCGCGGTGGAGCTCCAGCTTTTGTTCCCTTTAGTGAGGGTTA
ATTTCGAGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAA
GTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGC
TGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTT
CGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGG
CCAGCAAAAGGCCAGGGACCCGTAAAAAGCCGCGTTGCTGGCGTTTTTTCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAA
GTCAGAGGTGGCGAAACCTGACAGGACTATAAAGATACAAGGCGTTTTCCCCCTGAAGCTCCCTCGTGCGCTCTCCTGGTTCGACCCTGGCGGTT
TACCGGAAACCTGTCCGCCTTTTCTCCTTTCGGGAAGCGTGGGCGCTTCTT
GATTGGGACCGGGCCCCCCTCGAGTTTTTTTTTTTTTTTTTTTTTTACCATGATGATATTTGAACAAATAAAAAAGTGTTACACACGAACTATGA
ATATGTATAACCAACACTCTCTAAATGTTCATCGAAACCTGAGTATAATCATCGGATAATCCTCTTGTAGAGTAGAAATCATCATCCCCATCTCC
TCGTGCCGAATTCCTGCAGCCCGGGGGATCCACTAGTTCTAGAGCGGCCGCCACCGCGGTGGAGCTCCAGCTTTTGTTCCCTTTAGTGAGGGTTA
ATTTCGAGCTTGGCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAA
GTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGC
TGCATTAATGAATCGGCCAACGCGCGGGGAGAGGCGGTTTGCGTATTGGGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTT
CGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGG
CCAGCAAAAGGCCAGGGACCCGTAAAAAGCCGCGTTGCTGGCGTTTTTTCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAA
GTCAGAGGTGGCGAAACCTGACAGGACTATAAAGATACAAGGCGTTTTCCCCCTGAAGCTCCCTCGTGCGCTCTCCTGGTTCGACCCTGGCGGTT
TACCGGAAACCTGTCCGCCTTTTCTCCTTTCGGGAAGCGTGGGCGCTTCTT
Unigenes |
Current Unigene builds | |||||
No current unigene builds incorporate this sequence |
Chromatogram |
SGN-ID: SGN-T347821 [Download][View] | Facility Assigned ID: TUS70J05_P1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Problems: | Possibly chimeric (anomalous insert into vector) |
Sequence Entropy: 0.916 | Expected Error Rate: 0.0027 | Quality Trim Threshold: 14.5 |