EST details — SGN-E547001
| Search information |
| Request: 547001 | Match: SGN-E547001 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C194375 | Clone name: TUS-70-K13 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C107580 [cLPP-6-A6] | Trace: SGN-T175272 | EST: SGN-E361500 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C194375 [TUS-70-K13] | Trace: SGN-T347877 | EST: SGN-E547002 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E547001 | Length: 801 bp (897 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E547001 [] (trimmed)
AAATCTCCAAACATAAGAAATTACGAGAGACAATGATGTTTATTTCTCCCAATATAGCAACGCAAGAATAGTACCACATCATTGCATTAGGCCTT
GCTGGCGATGTTGTTTGAAAGCCAATCCAGTCCCTCATATAGCCCTTCTCCAGAAGTAGCACATGTACTCTGGATATACCAGTGTCGTTGTCTGA
GAGAATGAAGGCCAAGCTTATCGGTGATTTCAGCCGCATTCATTGCATTTGGAAGATCTTGTTTGTTTGCAAAAACAAGCAACACAGCTTCTCTT
AATTCATCCTCATTTAACATCCTGTGAAGCTCATCCCTTGCCTCAACTACACGGTCTCTGTCATTGCTATCAACCACAAAGATGAGGCCCTGCGT
GTTCTGGAAATAGTGCCTCCATAGAGGTCTAATCAGATAACTTGTTGCCTGCTCTACGGGACACCAGTTCCACATGTTTGGATCAAACACAAGCT
TTTGAGCATAGCTCATTAGCATGTGCTATGATCATCTTGAACAGAAATTCAACTTGGCTCGAACAAGTATAGTTAAGCTTTACTTGATGTGGATC
AAACTTGTCCTGACCACCAACATCCCATACAGTAAAGCTGATGTTTTTGTATTCAACAGTCTCCACATTGAAGCCAATGGTTGGGATAGTGGTAA
CAATTTCTCCCAACTTGAGCTTGTACAGAATTGTGGTTTTACCAGCAGCATCGAGACCAACCATAAGAATTCGCATTTCTTTCTTTGCAAAGAGC
GACTAAAGAGTTTAGTGAAAGACAGCCCCATCTCCGCTTAT
GCTGGCGATGTTGTTTGAAAGCCAATCCAGTCCCTCATATAGCCCTTCTCCAGAAGTAGCACATGTACTCTGGATATACCAGTGTCGTTGTCTGA
GAGAATGAAGGCCAAGCTTATCGGTGATTTCAGCCGCATTCATTGCATTTGGAAGATCTTGTTTGTTTGCAAAAACAAGCAACACAGCTTCTCTT
AATTCATCCTCATTTAACATCCTGTGAAGCTCATCCCTTGCCTCAACTACACGGTCTCTGTCATTGCTATCAACCACAAAGATGAGGCCCTGCGT
GTTCTGGAAATAGTGCCTCCATAGAGGTCTAATCAGATAACTTGTTGCCTGCTCTACGGGACACCAGTTCCACATGTTTGGATCAAACACAAGCT
TTTGAGCATAGCTCATTAGCATGTGCTATGATCATCTTGAACAGAAATTCAACTTGGCTCGAACAAGTATAGTTAAGCTTTACTTGATGTGGATC
AAACTTGTCCTGACCACCAACATCCCATACAGTAAAGCTGATGTTTTTGTATTCAACAGTCTCCACATTGAAGCCAATGGTTGGGATAGTGGTAA
CAATTTCTCCCAACTTGAGCTTGTACAGAATTGTGGTTTTACCAGCAGCATCGAGACCAACCATAAGAATTCGCATTTCTTTCTTTGCAAAGAGC
GACTAAAGAGTTTAGTGAAAGACAGCCCCATCTCCGCTTAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E547001] | SGN-U578760 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T347876 [Download][View] | Facility Assigned ID: TUS70K13_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.976 | Expected Error Rate: 0.0027 | Quality Trim Threshold: 14.5 |
Working
