EST details — SGN-E547235
| Search information |
| Request: 547235 | Match: SGN-E547235 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C194511 | Clone name: TUS-71-A5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C108537 [cLPP-9-F24] | Trace: SGN-T172697 | EST: SGN-E360034 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C194511 [TUS-71-A5] | Trace: SGN-T350377 | EST: SGN-E549502 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E547235 | Length: 670 bp (884 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E547235 [] (trimmed)
GAAAACATGCCAAGGAAACTTACAGATGCTACACTCTTGGCTGGTTCTTTGTATAGTGCTGACATGATTAAAGAACAACAGACTCGTGGACATGT
CATCTCGACAAAAGATTACATTAGCATGATGAAACGCATGGAAGAACTCGAGGATAAGGTCATTACTCTTAGCCAGAAACCTTCTTCTATGCCAC
CTGAGAAAGAAAACATGCTTAACGCTGCCATTAACCGAGTTGGTACTTTGGAGGAAGAACTTTTAGCTACCAAGAAGGCTCTTGATGAAGCTCTT
GTCCGTCAACAAGAGCTCCTATCCGTCCTTGAGAAGAAAAAGAAGAAGAAGAAGTTCTTTGTTTTTTAAGTTTGAATTTCTTTAGATAGATGTAG
AGATGGTGATTTCATTTTTTGGCCCAAGAAAGTTTGTTTGAATGATCTCTCACATATTTGTAAAATTTTAACTCTTTAAAAACTTAAACATTGTT
TACATTACCTGTAGTGCTATTCACCAGCACAACTGCAGTAAGCTTTGTTCTATCTTCTTCGGCGAGATTTACTGTTCACCCTCNTCATTGGAGCT
CTAATTGTAAATGCCATATATTATGGCACATTACAGATACATCAGCTTGTATTTTTTTTCTGTAAATAAAGATGGAAGCAGTTGGCTGTTGGCTT
TGTTC
CATCTCGACAAAAGATTACATTAGCATGATGAAACGCATGGAAGAACTCGAGGATAAGGTCATTACTCTTAGCCAGAAACCTTCTTCTATGCCAC
CTGAGAAAGAAAACATGCTTAACGCTGCCATTAACCGAGTTGGTACTTTGGAGGAAGAACTTTTAGCTACCAAGAAGGCTCTTGATGAAGCTCTT
GTCCGTCAACAAGAGCTCCTATCCGTCCTTGAGAAGAAAAAGAAGAAGAAGAAGTTCTTTGTTTTTTAAGTTTGAATTTCTTTAGATAGATGTAG
AGATGGTGATTTCATTTTTTGGCCCAAGAAAGTTTGTTTGAATGATCTCTCACATATTTGTAAAATTTTAACTCTTTAAAAACTTAAACATTGTT
TACATTACCTGTAGTGCTATTCACCAGCACAACTGCAGTAAGCTTTGTTCTATCTTCTTCGGCGAGATTTACTGTTCACCCTCNTCATTGGAGCT
CTAATTGTAAATGCCATATATTATGGCACATTACAGATACATCAGCTTGTATTTTTTTTCTGTAAATAAAGATGGAAGCAGTTGGCTGTTGGCTT
TGTTC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E547235] | SGN-U563855 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T348110 [Download][View] | Facility Assigned ID: TUS71A05_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.963 | Expected Error Rate: 0.0100 | Quality Trim Threshold: 12.5 |
Working
