EST details — SGN-E548020
| Search information |
| Request: 548020 | Match: SGN-E548020 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189231 | Clone name: TUS-57-E5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C47486 [cLEI-16-G20] | Trace: SGN-T83221 | EST: SGN-E268997 | Direction: 5' | Facility: TIGR |
| Sequence |
| Sequence Id: SGN-E548020 | Length: 694 bp (890 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E548020 [] (trimmed)
CGAAAAAAGTGGCTCTTAGATTTCGTATTGCATTTGCCAAAAGATCCAGCTGGAATTTGTTTTGCCAAAACTTAAAAAACAGTGAATATCGACCT
AGTAATAAATAGATAAAATAAATCGATCTCCGTAGGTCGATTTTTTTTTACACTAAAGTTCATAAAGCATAGAATTCAAACGTGGGGTGATTACA
ACTTCCACAGGTTTTGCTTTAGGCATAGTAATCCCTTGACCTTCAGTCATATCCACTGGCAAATTTGATGGTGTACCAAAGCTAAATCCTTGAAT
TAATCGACCAATCGTGAGGTGCGCCACTTGCGTCGCGAAATTAATTCCGGGACAAGATCGTCTTCCAGAGCCAAACGGGATGAACTCAAAATGTT
GACCACGAGCATCTACATTTGAATGTTCGTTCAAGAATCTCTCTGGGATGAACTTATCAGGTTCTGAATAAACTCGAGGGTCTCGTTGTATTTTC
CATGCGTTCGCGAACAAACGAGTACCCTTTGGGATGTTGTACCCCGCCACGGTACAATCTTCCACAGCTTCGTGTGGAACTAACAAAGGCGCTGG
TGGATATAAACGTAATGCTTCTTTAACAATAGCCTGGAGATAGACAAGATCTTTGATGTCCGATTNCTCATCCATCTATCTTTACCGACTTTACT
ATCGGATTCTTTTTGAGCATTATTCATGA
AGTAATAAATAGATAAAATAAATCGATCTCCGTAGGTCGATTTTTTTTTACACTAAAGTTCATAAAGCATAGAATTCAAACGTGGGGTGATTACA
ACTTCCACAGGTTTTGCTTTAGGCATAGTAATCCCTTGACCTTCAGTCATATCCACTGGCAAATTTGATGGTGTACCAAAGCTAAATCCTTGAAT
TAATCGACCAATCGTGAGGTGCGCCACTTGCGTCGCGAAATTAATTCCGGGACAAGATCGTCTTCCAGAGCCAAACGGGATGAACTCAAAATGTT
GACCACGAGCATCTACATTTGAATGTTCGTTCAAGAATCTCTCTGGGATGAACTTATCAGGTTCTGAATAAACTCGAGGGTCTCGTTGTATTTTC
CATGCGTTCGCGAACAAACGAGTACCCTTTGGGATGTTGTACCCCGCCACGGTACAATCTTCCACAGCTTCGTGTGGAACTAACAAAGGCGCTGG
TGGATATAAACGTAATGCTTCTTTAACAATAGCCTGGAGATAGACAAGATCTTTGATGTCCGATTNCTCATCCATCTATCTTTACCGACTTTACT
ATCGGATTCTTTTTGAGCATTATTCATGA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E548020] | SGN-U565273 | Tomato 200607 | Build 2 | 3 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T348895 [Download][View] | Facility Assigned ID: TUS57E05_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.983 | Expected Error Rate: 0.0140 | Quality Trim Threshold: 12.5 |
Working
