EST details — SGN-E548144
Search information |
Request: 548144 | Match: SGN-E548144 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C189703 | Clone name: TUS-58-H21 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C73439 [cLER-4-M6] | Trace: SGN-T92815 | EST: SGN-E277982 | Direction: 5' | Facility: TIGR |
Clone: SGN-C189703 [TUS-58-H21] | Trace: SGN-T339845 | EST: SGN-E538970 | Direction: 3' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E548144 | Length: 812 bp (877 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E548144 [] (trimmed)
CTGCCGTAGAGTTCACCCTTTCTCAATCTACAATAACAACAAGAAGAAGAACCCAGCAAACCCTTTAATCACCAGTTTCTCAGTTCGTCAACTAT
ACTAAGGTGGGCTACAATGGCAACATCAGGAGTAGCTGCTAGTCCCATAAAATACTGTCTCCAATTACCTGTACAATGTCCAGGGTTGCGTGAGA
AGAGAGTTTCAGTTTCTAACTTAGGGAGATCAAGTCATTGTACTGTTTCTACACAGAAGTATCACCCAAGAAGAATGCCTTTAGTGAAGTGTGCA
ATGGAAGCTTCTTTTGGTGGTTCTACAGATGACTCTGCTGCTATCTTTCCGAGAATTAATGTGAAGGACCCATACAAACGACTTGGAATCAATAT
AGAAGCTTCCGAGGATGAAATCCAAGCTGCTAGGAACTTCCTAATACAAAGATATGCTGGTCATAAACCAAGTGTGGATGCAATTGAAGCTGCCC
ATGATAAAATAATAATGCAGAAATTCTATGATAGAAAGAACCCAAAAATTGACGTTAAAAAGAAAGTCAGGGAAATGAAGCAATCTCGTGTTGTG
CAGGCTGTTACTAGCAGGTTTAGGACACCAGCTACAAAGTTCATTGTGAAAACTTCCATTGCTTTCATAGTCCTTGGAGCTCTCACAGTTCTGTT
TCCTACTGAAGAAAGTCCAACCCTTCAAGTTGCCATTTCCCTGATCACTGCCATGTATTTCATTCATGATCGGTTAAAGAACAACTTCGAGCTTT
TCTATATGGAGCTGGTGCTTTTATTTTTTCTTGGCTTCTGGGGACATTCTTG
ACTAAGGTGGGCTACAATGGCAACATCAGGAGTAGCTGCTAGTCCCATAAAATACTGTCTCCAATTACCTGTACAATGTCCAGGGTTGCGTGAGA
AGAGAGTTTCAGTTTCTAACTTAGGGAGATCAAGTCATTGTACTGTTTCTACACAGAAGTATCACCCAAGAAGAATGCCTTTAGTGAAGTGTGCA
ATGGAAGCTTCTTTTGGTGGTTCTACAGATGACTCTGCTGCTATCTTTCCGAGAATTAATGTGAAGGACCCATACAAACGACTTGGAATCAATAT
AGAAGCTTCCGAGGATGAAATCCAAGCTGCTAGGAACTTCCTAATACAAAGATATGCTGGTCATAAACCAAGTGTGGATGCAATTGAAGCTGCCC
ATGATAAAATAATAATGCAGAAATTCTATGATAGAAAGAACCCAAAAATTGACGTTAAAAAGAAAGTCAGGGAAATGAAGCAATCTCGTGTTGTG
CAGGCTGTTACTAGCAGGTTTAGGACACCAGCTACAAAGTTCATTGTGAAAACTTCCATTGCTTTCATAGTCCTTGGAGCTCTCACAGTTCTGTT
TCCTACTGAAGAAAGTCCAACCCTTCAAGTTGCCATTTCCCTGATCACTGCCATGTATTTCATTCATGATCGGTTAAAGAACAACTTCGAGCTTT
TCTATATGGAGCTGGTGCTTTTATTTTTTCTTGGCTTCTGGGGACATTCTTG
Unigenes |
Current Unigene builds | |||||
[SGN-E548144] | SGN-U563193 | Tomato 200607 | Build 2 | 11 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T349019 [Download][View] | Facility Assigned ID: TUS58H21_Q1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.970 | Expected Error Rate: 0.0082 | Quality Trim Threshold: 14.5 |