EST details — SGN-E548414
Search information |
Request: 548414 | Match: SGN-E548414 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C190659 | Clone name: TUS-60-P17 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C87358 [cLET-4-D21] | Trace: SGN-T103286 | EST: SGN-E289615 | Direction: 5' | Facility: TIGR |
Clone: SGN-C190659 [TUS-60-P17] | Trace: SGN-T341487 | EST: SGN-E540612 | Direction: 3' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E548414 | Length: 790 bp (887 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E548414 [] (trimmed)
GTATTGTAAAGGTCATCCAGATAATAGTCGTTTAATTGAAATTGATGAAAATGAGAGTGGGGAGGTTGTGCTTCCTGGTGGAATTTCAATACCTA
ATGTGTCAAAATCTATCAAATGTGATAAAGGAGAACACACACGGTTTGGCTCTGATGTTCTTTCTTTCCAGCAGATGTCAGAGCAGTTCAATCAG
GAAGTATCCGTGAATGGTAAAATTCCTTCGGGGCTCTTCAATACTATGTTCGAGTTTTCTGGTTCTTGGCAGAAGGATGCTGCATACACTAAAAC
CCTTGCTTTTGATGGTGTGTTCATCACGTTGTACTCTGTTGCTCTAGAAAAATCTCAAATGGTGCTGTGTGATTATGTTAAAAAGGAAGTTCCAT
CAACATGGGATCCTGCAGCATTAGCAAGGTTTATTGAAAAATTTGGTACTCATGTCATTGTTGGTATAAAGATGGGGGGAAAAGATGTAATATAT
ATGAAACAACAGCACTCCTCATCGCTTCTGCCCGCTGACGTGCAAAAACGTTTGAAGACAATGGCAGATAAGAGGTTTTCAGGTGCAAATGAACA
AGGGGGAGTAGAATCGCAGCAGACACATCAGAATGAGAAGTTTGAAATCAGGGAGCACCGACTGAGGTTTGCCGATCCCAATATATCAGGTTCAT
ATGCACATAAGGAGGATACTGTTTGTATTTGCAAGAAGAGAGGTGGAAGTGATAGCAGAGGCCTGATGCATAATCAGTGGGTACAAAGTGTTGAT
CAGGAGCCTGATGTGATCTCAATGTCCTTC
ATGTGTCAAAATCTATCAAATGTGATAAAGGAGAACACACACGGTTTGGCTCTGATGTTCTTTCTTTCCAGCAGATGTCAGAGCAGTTCAATCAG
GAAGTATCCGTGAATGGTAAAATTCCTTCGGGGCTCTTCAATACTATGTTCGAGTTTTCTGGTTCTTGGCAGAAGGATGCTGCATACACTAAAAC
CCTTGCTTTTGATGGTGTGTTCATCACGTTGTACTCTGTTGCTCTAGAAAAATCTCAAATGGTGCTGTGTGATTATGTTAAAAAGGAAGTTCCAT
CAACATGGGATCCTGCAGCATTAGCAAGGTTTATTGAAAAATTTGGTACTCATGTCATTGTTGGTATAAAGATGGGGGGAAAAGATGTAATATAT
ATGAAACAACAGCACTCCTCATCGCTTCTGCCCGCTGACGTGCAAAAACGTTTGAAGACAATGGCAGATAAGAGGTTTTCAGGTGCAAATGAACA
AGGGGGAGTAGAATCGCAGCAGACACATCAGAATGAGAAGTTTGAAATCAGGGAGCACCGACTGAGGTTTGCCGATCCCAATATATCAGGTTCAT
ATGCACATAAGGAGGATACTGTTTGTATTTGCAAGAAGAGAGGTGGAAGTGATAGCAGAGGCCTGATGCATAATCAGTGGGTACAAAGTGTTGAT
CAGGAGCCTGATGTGATCTCAATGTCCTTC
Unigenes |
Current Unigene builds | |||||
[SGN-E548414] | SGN-U585158 | Tomato 200607 | Build 2 | 11 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T349289 [Download][View] | Facility Assigned ID: TUS60P17_Q1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.964 | Expected Error Rate: 0.0065 | Quality Trim Threshold: 14.5 |