EST details — SGN-E548863
| Search information |
| Request: 548863 | Match: SGN-E548863 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C192247 | Clone name: TUS-65-B21 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C94863 [cLEX-6-A13] | Trace: SGN-T116014 | EST: SGN-E303996 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C94863 [cLEX-6-A13] | Trace: SGN-T116152 | EST: SGN-E304134 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C192247 [TUS-65-B21] | Trace: SGN-T344221 | EST: SGN-E543346 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E548863 | Length: 684 bp (891 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E548863 [] (trimmed)
GAGTCACTGTAGTATAAACAGCCGCCGATGCAAAACTTTTTTTTCTTGACAGACTGCCGACGTGATGAAACTTCCTTCCCACATGGCCATTTTTT
TCTTCCTTAAAACTATTCGTTGATTTGGTTTCTTTACACCCAATGACAGAGAAGAGCTGACAATCTTTTTTTTTTTTCTCTCTCACACAAATCAT
CATTATATAAAGTAGACTTTGGACTCTGTTACAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTTAATTT
TTGGGTTTTTTTGTTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGC
TGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGG
TCTAACCTATTGTTTTACAATATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTTTGATGCTGTTATACATTTTGC
TGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGGAGTCATGGCAA
CGCGTGGATGCAAAAATCT
TCTTCCTTAAAACTATTCGTTGATTTGGTTTCTTTACACCCAATGACAGAGAAGAGCTGACAATCTTTTTTTTTTTTCTCTCTCACACAAATCAT
CATTATATAAAGTAGACTTTGGACTCTGTTACAAGTCCGAAAATATCAGATTTTCATTCTCTAACCTCAAATCGAACCTTTTTTTTCTTTAATTT
TTGGGTTTTTTTGTTGTGATTTGGATCAATGTCGAAGAATATATTGGTGACGGGTGGAGCTGGGTATATTGGGAGTCACACGGTGTTACAGTTGC
TGTTGGGTGGTTATAAGACAGTGGTGGTTGATAATTTGGATAATTCATCTGCAATTGCAATCAAAAGGGTTCAGGAACTTGCGGGTCGATTTGGG
TCTAACCTATTGTTTTACAATATTGATCTGCGTGATAAGCCTGCAGTTGAAAAGCTTTTCGAGTCTAACAAGTTTGATGCTGTTATACATTTTGC
TGGACTAAAAGCAGTGGGTGAAAGTGTCCAGAAACCTTTGATGTACTATAACAACAATATTACAGGTACAATAACCCTGCTGGGAGTCATGGCAA
CGCGTGGATGCAAAAATCT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E548863] | SGN-U583214 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T349738 [Download][View] | Facility Assigned ID: TUS65B21_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0017 | Quality Trim Threshold: 14.5 |
Working
