EST details — SGN-E548877
| Search information |
| Request: 548877 | Match: SGN-E548877 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C192297 | Clone name: TUS-65-D23 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C95100 [cLEX-8-G14] | Trace: SGN-T115989 | EST: SGN-E301462 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C192297 [TUS-65-D23] | Trace: SGN-T344307 | EST: SGN-E543432 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E548877 | Length: 788 bp (861 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E548877 [] (trimmed)
GGGCAGACATCAAATTCCCCGTCACGCAGTAGAGTACAGCCAAACTAGTTTCTTGTTGATGACATAGTTTGCTCAATCCTAGAGCTAGATTCACA
CACTCCGCTACTATAAAATTTGTTCTTCCCCCTCGTCTTGGTTGCCTTTATCGTGCGCCCATCTCTCTTGGGAACTTGAGTTTTGCTGCTGAGAT
TTGACCATGGGTAATGCTTCTTCGATGTTGACTCAATATGATATTGAGGATGTTCAAGACCACTGCGACCATCTCTTTGCACAGCAGGAAATAGT
GTCACTGTATCAGAGGTTCTGCCAACTTGATCGGAATTCAAAGGGTTTTATATCAGCTGATGAGTTTCTCTCTGTGCCAGAATTCGCAATGAATC
CACTTTCTCAGAGATTGCTTAAGATGGTGGATGGCTTGAACTTCAAGGACTTTGTGGCATTTTTATCAACTTTCAGTGCTAAGGCCAGTGTGGCA
CAGAAAATTGAACTTATCTTCAAAGTGTACGATTCTGATTGCAATGGGAAGGTGACTTTTGATGACATAATGGAAGTGCTTCGGGATTTAACTGG
ATCATTCATTTCTGACAAGCAAAGAGAGGAAGTGTTAAGCCAGGTTTTGCACGAGGCTGGTTATACAAGGGACTCCTTACTGCAGTTGAATGACT
TCATTAAGATCATGGACCACCCTGGTTTGAAGATGGAGGTTGAAGTACCAATTGACTAGTTACGCTTGCCATGTCATTCAGATGTCTCTGTGTAC
ACGTTTTGTTGGGATTGTGCACCTGCAA
CACTCCGCTACTATAAAATTTGTTCTTCCCCCTCGTCTTGGTTGCCTTTATCGTGCGCCCATCTCTCTTGGGAACTTGAGTTTTGCTGCTGAGAT
TTGACCATGGGTAATGCTTCTTCGATGTTGACTCAATATGATATTGAGGATGTTCAAGACCACTGCGACCATCTCTTTGCACAGCAGGAAATAGT
GTCACTGTATCAGAGGTTCTGCCAACTTGATCGGAATTCAAAGGGTTTTATATCAGCTGATGAGTTTCTCTCTGTGCCAGAATTCGCAATGAATC
CACTTTCTCAGAGATTGCTTAAGATGGTGGATGGCTTGAACTTCAAGGACTTTGTGGCATTTTTATCAACTTTCAGTGCTAAGGCCAGTGTGGCA
CAGAAAATTGAACTTATCTTCAAAGTGTACGATTCTGATTGCAATGGGAAGGTGACTTTTGATGACATAATGGAAGTGCTTCGGGATTTAACTGG
ATCATTCATTTCTGACAAGCAAAGAGAGGAAGTGTTAAGCCAGGTTTTGCACGAGGCTGGTTATACAAGGGACTCCTTACTGCAGTTGAATGACT
TCATTAAGATCATGGACCACCCTGGTTTGAAGATGGAGGTTGAAGTACCAATTGACTAGTTACGCTTGCCATGTCATTCAGATGTCTCTGTGTAC
ACGTTTTGTTGGGATTGTGCACCTGCAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E548877] | SGN-U581483 | Tomato 200607 | Build 2 | 16 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T349752 [Download][View] | Facility Assigned ID: TUS65D23_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.974 | Expected Error Rate: 0.0022 | Quality Trim Threshold: 14.5 |
Working
