EST details — SGN-E549527
Search information |
Request: 549527 | Match: SGN-E549527 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C194599 | Clone name: TUS-71-D21 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C103897 [cLPP-12-E3] | Trace: SGN-T174964 | EST: SGN-E361765 | Direction: 5' | Facility: TIGR |
Clone: SGN-C194599 [TUS-71-D21] | Trace: SGN-T348261 | EST: SGN-E547386 | Direction: 3' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E549527 | Length: 679 bp (876 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E549527 [] (trimmed)
GATCGGTTCAACAATTAATTTTCTTCTTCATCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTTTGTAAGGTTTTTGGGAATGGATGAGG
TCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAG
GCTTTCTGCGAAAGCGATCCTCCCTCGGTAACTAGCTGCAAGCATGAATTTCATCTCCAGTGCGTCCTGGAATGGTGTCAGAGAAGTTCTAATTG
TCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAG
AAAGAAATGCTACAGTATTTCAGTTTCCTGCGCTGGGAGATTTTGAACTACAGCATTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGC
ATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAAGGGAGGGCTCAAGAAATCGCTCATCCACCAATAACCG
TCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTAGTGGATCAATTTCTGATCCTGCTGNCA
CACAACAGTTGATT
TCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAG
GCTTTCTGCGAAAGCGATCCTCCCTCGGTAACTAGCTGCAAGCATGAATTTCATCTCCAGTGCGTCCTGGAATGGTGTCAGAGAAGTTCTAATTG
TCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAG
AAAGAAATGCTACAGTATTTCAGTTTCCTGCGCTGGGAGATTTTGAACTACAGCATTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGC
ATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAAGGGAGGGCTCAAGAAATCGCTCATCCACCAATAACCG
TCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTAGTGGATCAATTTCTGATCCTGCTGNCA
CACAACAGTTGATT
Unigenes |
Current Unigene builds | |||||
[SGN-E549527] | SGN-U583318 | Tomato 200607 | Build 2 | 13 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T350402 [Download][View] | Facility Assigned ID: TUS71D21_Q1 |
Submitter: Koni | Sequencing Facility: INRA (MWG) |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.969 | Expected Error Rate: 0.0099 | Quality Trim Threshold: 14.5 |