EST details — SGN-E549562
| Search information |
| Request: 549562 | Match: SGN-E549562 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C194723 | Clone name: TUS-71-J1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C104884 [cLPP-16-F7] | Trace: SGN-T176404 | EST: SGN-E364022 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C194723 [TUS-71-J1] | Trace: SGN-T348474 | EST: SGN-E547599 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E549562 | Length: 769 bp (892 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E549562 [] (trimmed)
GAAAGTTAATGATTGGTACTTCATAAACGGTTATTTTACTGCACTATCAGTGCAATATGTCTGTAACATTTCTTACAATTTCAAAAGGAGACGCT
TTGTAAGACGTTGTGGCTTCATTTTTGTTTTTTTACCATTTATATATATATATATATATATATTACCATAAAGAAAAAATGGAGTTGGAATTAGA
ACCTCCATGATCATTTTTCTTGGCAATTGCAGCTACAGGAGGTAGTGGTGGAGTAACAAAGTCTTTAGTCTCCAAGTACTCTGGAGGGGGAGGCT
TGTACTCTTCTACTTCTTTTGGATCGAGGGCATACGTTATCACTTCCCCTGGATTTATCTCTGGTATTCTATATGACTCTTTATTCCCAGTGCAC
AAATTCCTGGTGTATGCATTTGCTGTTCTTGGGTACTGCGTTATAATTCCATCCGCACCATAGTAAATGAGGTTATGGATCAAGGTGTATGGATC
GGAGTTAAAATCCATGTAAATATCTTGGAATTCATTCAAAACAGTTCCAGCATAGACACTAATATTGGCCCAATGCATACATTCAATAAGGTTGG
TCAAGTTCAAAGTAAAACCCTCTCCTCGAAATTGTGTGTATAAGGAATGTTTATGTAAAAGTACTGCATCCGCATGCTTCTTGATTTCTAATGCT
GTCTCATTCGTTACAAATTCAACCTTCTTCTTAATGTGAAGTACTTTTTGGTAAGTCGAGATATCCTTGAATTTGTCTAGAACTGAACTTTCACC
TGACATGAT
TTGTAAGACGTTGTGGCTTCATTTTTGTTTTTTTACCATTTATATATATATATATATATATATTACCATAAAGAAAAAATGGAGTTGGAATTAGA
ACCTCCATGATCATTTTTCTTGGCAATTGCAGCTACAGGAGGTAGTGGTGGAGTAACAAAGTCTTTAGTCTCCAAGTACTCTGGAGGGGGAGGCT
TGTACTCTTCTACTTCTTTTGGATCGAGGGCATACGTTATCACTTCCCCTGGATTTATCTCTGGTATTCTATATGACTCTTTATTCCCAGTGCAC
AAATTCCTGGTGTATGCATTTGCTGTTCTTGGGTACTGCGTTATAATTCCATCCGCACCATAGTAAATGAGGTTATGGATCAAGGTGTATGGATC
GGAGTTAAAATCCATGTAAATATCTTGGAATTCATTCAAAACAGTTCCAGCATAGACACTAATATTGGCCCAATGCATACATTCAATAAGGTTGG
TCAAGTTCAAAGTAAAACCCTCTCCTCGAAATTGTGTGTATAAGGAATGTTTATGTAAAAGTACTGCATCCGCATGCTTCTTGATTTCTAATGCT
GTCTCATTCGTTACAAATTCAACCTTCTTCTTAATGTGAAGTACTTTTTGGTAAGTCGAGATATCCTTGAATTTGTCTAGAACTGAACTTTCACC
TGACATGAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E549562] | SGN-U564899 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T350437 [Download][View] | Facility Assigned ID: TUS71J01_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.958 | Expected Error Rate: 0.0056 | Quality Trim Threshold: 14.5 |
Working
