EST details — SGN-E549630

Search information 
Request: 549630Match: SGN-E549630
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C169603Clone name: TUS-6-C9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C21401 [cLED-33-I6] Trace: SGN-T56973 EST: SGN-E239700 Direction: 5' Facility: TIGR
Clone: SGN-C169603 [TUS-6-C9] Trace: SGN-T350701 EST: SGN-E549826 Direction: 5' Facility: Avesthagen
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E549630Length: 715 bp (787 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E549630 [] (trimmed) CGGCATTAAATGACTGCGAGTCTACAGACACACCCCTTCGAATGCGCATACTTAAGCAGCTTAAATGGATAATTAGACTGCTCACGCTGCACTTT
CTGAACGAACAAATAATGGAATCTAGAACGGTACAAACCAGCAGACGTTTGACAAACCAGCAGTACCATTAAAAACATATTAAAAAGAATTTTCA
TATTGAGTGTACAAGGTCAACCTCTAAAAATATTAGCTCATCTACTTTTACAGATCACTTATAGAACTCGAAGTCAGTGTCCGGCTTCTTCACAT
TGGTCCTGTAACCCTTTTCAAAGTCCTTGGGGAGTATGACATATCGATTCTTTCGCACTGCATGCGTACCTGCTTCCTGACATATAGCTGCAATC
TGTAGACATTGCAACATGTGCATCACAGTCGTGTTGGTCAAATTGACTCTTCAATTATAAAGATCATTCACATTTTAAAAATAGAAGGACCAAAG
CAGATGAAGCAAAATAAAGAACTACTCTTAGTTGTAACAGTAGACATCAACATTTTGAATCAATAGTGAAGAATCCTGTTATCAGTCGAAAAAAT
AGATGAAGTATAAAGAGACAAACCTCAGCAGCACTAATTTTATCAGGGCGAGAAACATAATCTTCCAAGTCAACCTCGTCACCTAGGTTCATCTT
AGCAGTACAGACCTGAAAAACAAGCCTCTTTTGACGCCTATCAGTGCAAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E549630] SGN-U573935 Tomato 200607 Build 2 2 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T350505 [Download] [View] Facility Assigned ID: AGT-287_H03_TUS6#1-C9.Td_030
Submitter: Koni Sequencing Facility: Avesthagen
Funding Organization: Italian Ministry of Agriculture and Forestry (MiPAF)
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.968 Expected Error Rate: 0.0089 Quality Trim Threshold: 14.5