EST details — SGN-E549939
Search information |
Request: 549939 | Match: SGN-E549939 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C169394 | Clone name: TUS-5-J16 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C169394 [TUS-5-J16] | Trace: SGN-T351119 | EST: SGN-E550244 | Direction: 3' | Facility: Avesthagen |
Sequence |
Sequence Id: SGN-E549939 | Length: 737 bp (795 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E549939 [] (trimmed)
CAACAGTGGGATTTATGAGGCAAATATTGCTAAAAGCCCTGAAGGAAAAATGGCAGCCTGTACATACTTTAGCTGCCTCAGGAGAGTTTTACCTT
CTCACCTCTTTGTTGAAGCATGTTGTTGATATTAATGTTCCAGATAAGGATGGATTGACAGCTATCCATAAAGCAATTCTTGGCAAGAAGCAGGC
TATTTTTAACTTTCTTTTAAGAGAATCTGCAAATCCATTTATACTTGACAAAGATGGAGCCACCTTGATGCACTATGCTGTTCGAACGGCATCCA
CTCACATGATAAAAATCCTTCTCTTGTATAATGTTGATATAAACCTCCAAGATCATGATGGATGGACACCTTTGCATCTAGCTGTTCAATCCCGT
AGAACCGATATAGTGAGGCTTTTGTTAATTAAGGGAGCTGACAAGACTCTAAAGAACAGGGATGGTCTAACCCCACTTGACATATGCCTCCATTC
TGGTCGAGATATAAGGACGTATGAGCTTATCAAATTGTTGAAACAACTTCCCAAGGTTTCATTAGTTGGCTTGACCTAAAAATGCAGCTGCTAAC
CACGAAATTGGCGGATTGGTAGTTCCAGCTTTGAGTTTGGACTCTGTGTGAGTTATTTCTACAACACACTGCCCTTGAGTTGACCCGAGAAGCGG
ACTCAGAATTTATGCTTACACTGGTAGGGAAAGGAATTTCTCTTTTTTGATTCTCACATTGTACTACACTGC
CTCACCTCTTTGTTGAAGCATGTTGTTGATATTAATGTTCCAGATAAGGATGGATTGACAGCTATCCATAAAGCAATTCTTGGCAAGAAGCAGGC
TATTTTTAACTTTCTTTTAAGAGAATCTGCAAATCCATTTATACTTGACAAAGATGGAGCCACCTTGATGCACTATGCTGTTCGAACGGCATCCA
CTCACATGATAAAAATCCTTCTCTTGTATAATGTTGATATAAACCTCCAAGATCATGATGGATGGACACCTTTGCATCTAGCTGTTCAATCCCGT
AGAACCGATATAGTGAGGCTTTTGTTAATTAAGGGAGCTGACAAGACTCTAAAGAACAGGGATGGTCTAACCCCACTTGACATATGCCTCCATTC
TGGTCGAGATATAAGGACGTATGAGCTTATCAAATTGTTGAAACAACTTCCCAAGGTTTCATTAGTTGGCTTGACCTAAAAATGCAGCTGCTAAC
CACGAAATTGGCGGATTGGTAGTTCCAGCTTTGAGTTTGGACTCTGTGTGAGTTATTTCTACAACACACTGCCCTTGAGTTGACCCGAGAAGCGG
ACTCAGAATTTATGCTTACACTGGTAGGGAAAGGAATTTCTCTTTTTTGATTCTCACATTGTACTACACTGC
Unigenes |
Current Unigene builds | |||||
[SGN-E549939] | SGN-U567201 | Tomato 200607 | Build 2 | 8 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T350814 [Download] [View] | Facility Assigned ID: AGT-277_B04_TUS5#4-B4.T3_031 |
Submitter: Koni | Sequencing Facility: Avesthagen |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.970 | Expected Error Rate: 0.0051 | Quality Trim Threshold: 14.5 |