EST details — SGN-E549939

Search information 
Request: 549939Match: SGN-E549939
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C169394Clone name: TUS-5-J16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C169394 [TUS-5-J16] Trace: SGN-T351119 EST: SGN-E550244 Direction: 3' Facility: Avesthagen
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Sequence 
Sequence Id: SGN-E549939Length: 737 bp (795 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E549939 [] (trimmed) CAACAGTGGGATTTATGAGGCAAATATTGCTAAAAGCCCTGAAGGAAAAATGGCAGCCTGTACATACTTTAGCTGCCTCAGGAGAGTTTTACCTT
CTCACCTCTTTGTTGAAGCATGTTGTTGATATTAATGTTCCAGATAAGGATGGATTGACAGCTATCCATAAAGCAATTCTTGGCAAGAAGCAGGC
TATTTTTAACTTTCTTTTAAGAGAATCTGCAAATCCATTTATACTTGACAAAGATGGAGCCACCTTGATGCACTATGCTGTTCGAACGGCATCCA
CTCACATGATAAAAATCCTTCTCTTGTATAATGTTGATATAAACCTCCAAGATCATGATGGATGGACACCTTTGCATCTAGCTGTTCAATCCCGT
AGAACCGATATAGTGAGGCTTTTGTTAATTAAGGGAGCTGACAAGACTCTAAAGAACAGGGATGGTCTAACCCCACTTGACATATGCCTCCATTC
TGGTCGAGATATAAGGACGTATGAGCTTATCAAATTGTTGAAACAACTTCCCAAGGTTTCATTAGTTGGCTTGACCTAAAAATGCAGCTGCTAAC
CACGAAATTGGCGGATTGGTAGTTCCAGCTTTGAGTTTGGACTCTGTGTGAGTTATTTCTACAACACACTGCCCTTGAGTTGACCCGAGAAGCGG
ACTCAGAATTTATGCTTACACTGGTAGGGAAAGGAATTTCTCTTTTTTGATTCTCACATTGTACTACACTGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E549939] SGN-U567201 Tomato 200607 Build 2 8 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T350814 [Download] [View] Facility Assigned ID: AGT-277_B04_TUS5#4-B4.T3_031
Submitter: Koni Sequencing Facility: Avesthagen
Funding Organization: Italian Ministry of Agriculture and Forestry (MiPAF)
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.970 Expected Error Rate: 0.0051 Quality Trim Threshold: 14.5