EST details — SGN-E550120
Search information |
Request: 550120 | Match: SGN-E550120 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C328599 | Clone name: TUS-5-F30 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C328599 [TUS-5-F30] | Trace: SGN-T350996 | EST: SGN-E550121 | Direction: 3' | Facility: Avesthagen |
Sequence |
Sequence Id: SGN-E550120 | Length: 670 bp (796 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E550120 [] (trimmed)
TGGATCGACGGGCTGCAGGCTTCTCTTCAATTTTTATTTTTAAAAAATGTCTCCATCATTGGCAAAATCTAGTGAAAAATTGAAGAATGAAATTG
AAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGT
TATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCA
AGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAGTTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGG
ATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAACACCAGTTAGATATGGGACAAGTTTT
AATCAAACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGCTTGTTTGTGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCC
TTCTTATTTTAGGGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGGAGCCATCCTAGAAAGTCTTGGAATTA
ACGTT
AAGATTATCATAAAGGAGTAAAGTATTTGCATGAAAGTGGAATTCAAAAAGTTCCAAAGAAATACATTTTTCCTATTTCAGAAAGACCAAATTGT
TATACTATAAATGAAAATCCACAAGTTGCTAGCAAACACAATCTTAAGTTGCCTGTCATAGATTTTTCTCAACTCTATGGTCCTAATAGAGCTCA
AGTTCTTGATTCACTCTCCTATGCCTGTGAAAACTATGGATTTTTTCAGTTGACAAACCATGGGATTCCAGAAGAGGTAATAAAAAATATGGTGG
ATGTTGGAGGAAGGTTTTTTGATCTTCCATTAGTAGAAAGGGAAAAGTACATGACAAAAGACATGACAACACCAGTTAGATATGGGACAAGTTTT
AATCAAACAAAAGATGGTGTCTTTTGTTGGAGGGACTTTCTCAAGCTTGTTTGTGACCCTCTTCCTCAAGTCCTTCCTCATTGGCCTTCTTCTCC
TTCTTATTTTAGGGAAATGGCAGTTACATACTCTAAAGAGACCAAAATCTTATTTATAAAGTTAGTGGGAGCCATCCTAGAAAGTCTTGGAATTA
ACGTT
Unigenes |
Current Unigene builds | |||||
[SGN-E550120] | SGN-U576069 | Tomato 200607 | Build 2 | 17 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T350995 [Download] [View] | Facility Assigned ID: AGT-259_F06_TUS05#2-F18.T3_057 |
Submitter: Koni | Sequencing Facility: Avesthagen |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.947 | Expected Error Rate: 0.0159 | Quality Trim Threshold: 14.5 |