EST details — SGN-E550379
| Search information |
| Request: 550379 | Match: SGN-E550379 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C169500 | Clone name: TUS-5-O2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C18194 [cLED-22-G16] | Trace: SGN-T54289 | EST: SGN-E238223 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C169500 [TUS-5-O2] | Trace: SGN-T350911 | EST: SGN-E550036 | Direction: 5' | Facility: Avesthagen |
| Sequence |
| Sequence Id: SGN-E550379 | Length: 624 bp (776 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E550379 [] (trimmed)
TATTTTGTTACACAAAAAGATAAGATACTACACTATGTATTATGCAACAACCACTTCCTACATCATCATAGTATCTCTTGAATAACAAAATCAAC
AATGTTCAACAACAAAATTATTCAAAATATCTGAATCCTGGTTCTATGGGCAACACCTAATTGATCAAATATTTCCATGATCAAACTTTACTAAC
CCTTTACTAACATCATCATTAGTCCATTACTATCTCAGACTTGCAATTTTCCTTAGCACCATCACTTTCTGGCTTTTCCTTAGTCTCCATCGACG
TCCCATTTTCGTTCACATCATCAGCCCTTTTCGCGTCTTCTGCAGCAGCTGCTGCTTCTTTCTTTTTCTTTTCGTTCTCGTTCTCTTCCTTCTCC
TTCTCTGCCTTTTCTTCCTCAGCCTTCAATTTTGCTTCCACCTTTGCTGTTTCAATAGCTTTAACTAACCTCTCCAAGCAAGTATCTGCATTTTC
CTTAGAAGACTTGGGCATCAAACTCTCAGCAACATCAGCTGGAGTTATATTAGTTTCCCCTAATAAACGATGAATCTCAGGAAAGTAATCATCAT
GAGACGTAACGTCTAGATAATTATTAGCAAGCACCTTGAAGGACTCAAAACAAC
AATGTTCAACAACAAAATTATTCAAAATATCTGAATCCTGGTTCTATGGGCAACACCTAATTGATCAAATATTTCCATGATCAAACTTTACTAAC
CCTTTACTAACATCATCATTAGTCCATTACTATCTCAGACTTGCAATTTTCCTTAGCACCATCACTTTCTGGCTTTTCCTTAGTCTCCATCGACG
TCCCATTTTCGTTCACATCATCAGCCCTTTTCGCGTCTTCTGCAGCAGCTGCTGCTTCTTTCTTTTTCTTTTCGTTCTCGTTCTCTTCCTTCTCC
TTCTCTGCCTTTTCTTCCTCAGCCTTCAATTTTGCTTCCACCTTTGCTGTTTCAATAGCTTTAACTAACCTCTCCAAGCAAGTATCTGCATTTTC
CTTAGAAGACTTGGGCATCAAACTCTCAGCAACATCAGCTGGAGTTATATTAGTTTCCCCTAATAAACGATGAATCTCAGGAAAGTAATCATCAT
GAGACGTAACGTCTAGATAATTATTAGCAAGCACCTTGAAGGACTCAAAACAAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E550379] | SGN-U571250 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T351254 [Download] [View] | Facility Assigned ID: AGT-276_G02_TUS5#3-G2.Td_018 |
| Submitter: Koni | Sequencing Facility: Avesthagen |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.945 | Expected Error Rate: 0.0041 | Quality Trim Threshold: 14.5 |
Working
