EST details — SGN-E550406
Search information |
Request: 550406 | Match: SGN-E550406 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C169211 | Clone name: TUS-5-C1 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C16139 [cLED-15-F17] | Trace: SGN-T52390 | EST: SGN-E235817 | Direction: 5' | Facility: TIGR |
Clone: SGN-C169211 [TUS-5-C1] | Trace: SGN-T351029 | EST: SGN-E550154 | Direction: 5' | Facility: Avesthagen |
Sequence |
Sequence Id: SGN-E550406 | Length: 520 bp (786 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E550406 [] (trimmed)
TTTCTACATTAATCATCACTTTCTTAGAACAAATTAATAAACAACGTGCTTTTTATTAATAAACTTTTAAAGTAATTATGTAACAAGACGGTTAA
CCAGTAATCTGGTAACCAAATTATTCTCTCTTAATCAAATTTTCTTGTAAAAGTAAGTAACTTATATATTTATTTTCTATAAGTAATAAATCTAT
AATAATGACATACAAAAAGATAGCCATATAGATCCAAAGTTTGATTTGGACTTTTGGTGAAAAGGCCCAATTAAAATGTAAAAAGGGCCCTAGTA
TGGCCCAACATGTTAGATTCACATAATTGAGCATCCAGATGCATTCTCTTCACTAAAGTAATCACATTTGTTCACATAACATCCCTTTGGGAGTC
CATAGGGTATGGGCCCGGGCCCGGGCCCATATCCGTATGAATATGTGTCGTAGCATGGTGGTGGTGGAGGTGGTTGTACTGGTCTTCCGTACCAA
TTATCATGATAACAAGGGCCTCCAGTATAGCCTTCGTAACATTGC
CCAGTAATCTGGTAACCAAATTATTCTCTCTTAATCAAATTTTCTTGTAAAAGTAAGTAACTTATATATTTATTTTCTATAAGTAATAAATCTAT
AATAATGACATACAAAAAGATAGCCATATAGATCCAAAGTTTGATTTGGACTTTTGGTGAAAAGGCCCAATTAAAATGTAAAAAGGGCCCTAGTA
TGGCCCAACATGTTAGATTCACATAATTGAGCATCCAGATGCATTCTCTTCACTAAAGTAATCACATTTGTTCACATAACATCCCTTTGGGAGTC
CATAGGGTATGGGCCCGGGCCCGGGCCCATATCCGTATGAATATGTGTCGTAGCATGGTGGTGGTGGAGGTGGTTGTACTGGTCTTCCGTACCAA
TTATCATGATAACAAGGGCCTCCAGTATAGCCTTCGTAACATTGC
Unigenes |
Current Unigene builds | |||||
[SGN-E550406] | SGN-U578859 | Tomato 200607 | Build 2 | 25 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T351281 [Download] [View] | Facility Assigned ID: AGT-258_C01_TUS05#1-C1.Td_004 |
Submitter: Koni | Sequencing Facility: Avesthagen |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.940 | Expected Error Rate: 0.0051 | Quality Trim Threshold: 14.5 |