EST details — SGN-E552883
| Search information |
| Request: 552883 | Match: SGN-E552883 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C331764 | Clone name: cTSB-5-F2 |
| ||
| Library Name: cTSB | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: seed
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
No additional reads found.[Show information hierarchy]
| Sequence |
| Sequence Id: SGN-E552883 | Length: 927 bp (1263 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E552883 [] (trimmed)
GGACTTGTTGCTTTTGGATGTCACCCCTCTATCTCTTGGATTGGAAACTGCTGGAGGAGTCATGACTGTCTTGATTCCAAGGAATACCACCATTC
CTACCAAGAAAGAGCAGGTGTTCTCTACCTATTCTGACAACCAGCCTGGAGTGTTGATTCAGGTTTACGAGGGTGAGAGAGCAAGGACCAGAGAC
AACAACTTGTTGGGTAAATTTGAGCTCTCTGGTATTCCTCCTGCTCCTAGGGGTGTGCCTCAGATCACGGTCTGCTTTGACATTGATGCCAATGG
CATCCTGAACGTCTCAGCTGAAGACAAGACCACTGGACAGAAGAACAAGATCACTATTACCAATGACAAGGGTAGGTTATCAAAGGAAGAAATTG
AGAAGATGGTCCAGGAAGCAGAGAGGTACAAGGCAGAGGATGAAGAGCACAAGAAAAAGGTTGAGGCCAAGAATGCACTTGAGAACTATGCCTAC
AACATGAGGAACACTATAAAGGATGATAAGATTAGTTCTAAGCTTAGTGCAGACGACAAGAAAAAGATTGAGGATGCCATTGATCAGGCAATTTC
ATGGCTTGATAGCAACCAGCTTGCTGAAGCTGATGAGTTTGAAGATAAGATGAAGGAACTGGAGAGCCTATGTAATCCCATAATTGCAAAGATGT
ACCAGGGTGCTGGTGGTGAGGCAGGTGCACCTATGGATGATGATGATGCTCCTCCAGCTGGTTCTACCGGTGCAGGCCCCAAGATTGAGGAGGTC
GATTAAGTGTGAACAGTTCTAGTTTTATTCTCAGTATAAACTATTCTATTATATTTGGTACTTTTTTATGTTTTTGCTATATCGGTTTCGTCTAT
TTATTAAGCTGTTGAATGGTGATGGCTCTTTATATGAGTTTCATCGATTTTGAAATTTAAATGACTATCCGT
CTACCAAGAAAGAGCAGGTGTTCTCTACCTATTCTGACAACCAGCCTGGAGTGTTGATTCAGGTTTACGAGGGTGAGAGAGCAAGGACCAGAGAC
AACAACTTGTTGGGTAAATTTGAGCTCTCTGGTATTCCTCCTGCTCCTAGGGGTGTGCCTCAGATCACGGTCTGCTTTGACATTGATGCCAATGG
CATCCTGAACGTCTCAGCTGAAGACAAGACCACTGGACAGAAGAACAAGATCACTATTACCAATGACAAGGGTAGGTTATCAAAGGAAGAAATTG
AGAAGATGGTCCAGGAAGCAGAGAGGTACAAGGCAGAGGATGAAGAGCACAAGAAAAAGGTTGAGGCCAAGAATGCACTTGAGAACTATGCCTAC
AACATGAGGAACACTATAAAGGATGATAAGATTAGTTCTAAGCTTAGTGCAGACGACAAGAAAAAGATTGAGGATGCCATTGATCAGGCAATTTC
ATGGCTTGATAGCAACCAGCTTGCTGAAGCTGATGAGTTTGAAGATAAGATGAAGGAACTGGAGAGCCTATGTAATCCCATAATTGCAAAGATGT
ACCAGGGTGCTGGTGGTGAGGCAGGTGCACCTATGGATGATGATGATGCTCCTCCAGCTGGTTCTACCGGTGCAGGCCCCAAGATTGAGGAGGTC
GATTAAGTGTGAACAGTTCTAGTTTTATTCTCAGTATAAACTATTCTATTATATTTGGTACTTTTTTATGTTTTTGCTATATCGGTTTCGTCTAT
TTATTAAGCTGTTGAATGGTGATGGCTCTTTATATGAGTTTCATCGATTTTGAAATTTAAATGACTATCCGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E552883] | SGN-U579878 | Tomato 200607 | Build 2 | 84 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T355535 [Download] [View] | Facility Assigned ID: ctsb5f2 |
| Submitter: Koni | Sequencing Facility: Cornell |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.972 | Expected Error Rate: 0.0042 | Quality Trim Threshold: 14.5 |
Working
