EST details — SGN-E553527
| Search information |
| Request: 553527 | Match: SGN-E553527 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C332161 | Clone name: cTSC-1-G17 |
| ||
| Library Name: cTSC | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: seed
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
No additional reads found.[Show information hierarchy]
| Sequence |
| Sequence Id: SGN-E553527 | Length: 887 bp (1280 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E553527 [] (trimmed)
ATCAAATCACTGAAATTCTGTAAATATACTTGAGATAAAACAGAGAGAATTTGCATTTTTTACAAGAATCGAAAGAGATATGGCAAAGCACAACA
TCTAAGCAAAAGACAAAAGAAGAGACATGGATGGAATGTTACAACTCAACCAAACACGAAAGGGAAAATAAGACAGTGACAATTTATTGGTCTTT
TTTCTCAAACAGTAGAAGCTCCTTTTCTAGGACAGAAAGTTTAGTCCGCCATGGTGATGATGCAACGAAGGCCTTCTCCCTTCAGCATTAAATCG
AAAGCCTTATTGATTTCAGCAAATGGAAGTGTATGAGTGATGAATTTCTCCAATTCAAGTTCTTTGTTCATGTATTTCTCAACAACACAAGGAAT
ATCCGAACGAGGTTTGTAGTTTCCAAAGAAGGTTCCTTTGAGAGTCCGTTCATTCAAAAAGTTCAGAGGATGTGTCTTGAACACAGCTTCTTTAT
GGGGTACACCAACAAGAACCGCCACTCCCCAGCCATCATGGACACATTCAAATGCTGAAATCATAGCATCAATGTGACCAGTACATTCCACACTC
CTATCGACTCCGCCATCAGTCATCTCAGCAATTACCTCTTGAACTGGTTTACTATAGTCCTTTGGGTTCACAAACTCTGTCACACCAAATTTCTT
AGCTTGCTCAAATCTACTAGCATTTAAATCAACACCAATTATCCTCGAGGCACCAGCAATTCTGGCTCCTTCTGCAGCCGCGAGGCCTACAGCTC
CTAGTCCAAATATAGCCACACTTGAGCCTTTTGTTGGTTTAGCAACATTCAAACTTGCTCCCAGGCCTGTCGAAATTCCCCAACTAAGGACACAT
ACTTTGTCAAGAGGAGCAAGAGGGTTAATTTT
TCTAAGCAAAAGACAAAAGAAGAGACATGGATGGAATGTTACAACTCAACCAAACACGAAAGGGAAAATAAGACAGTGACAATTTATTGGTCTTT
TTTCTCAAACAGTAGAAGCTCCTTTTCTAGGACAGAAAGTTTAGTCCGCCATGGTGATGATGCAACGAAGGCCTTCTCCCTTCAGCATTAAATCG
AAAGCCTTATTGATTTCAGCAAATGGAAGTGTATGAGTGATGAATTTCTCCAATTCAAGTTCTTTGTTCATGTATTTCTCAACAACACAAGGAAT
ATCCGAACGAGGTTTGTAGTTTCCAAAGAAGGTTCCTTTGAGAGTCCGTTCATTCAAAAAGTTCAGAGGATGTGTCTTGAACACAGCTTCTTTAT
GGGGTACACCAACAAGAACCGCCACTCCCCAGCCATCATGGACACATTCAAATGCTGAAATCATAGCATCAATGTGACCAGTACATTCCACACTC
CTATCGACTCCGCCATCAGTCATCTCAGCAATTACCTCTTGAACTGGTTTACTATAGTCCTTTGGGTTCACAAACTCTGTCACACCAAATTTCTT
AGCTTGCTCAAATCTACTAGCATTTAAATCAACACCAATTATCCTCGAGGCACCAGCAATTCTGGCTCCTTCTGCAGCCGCGAGGCCTACAGCTC
CTAGTCCAAATATAGCCACACTTGAGCCTTTTGTTGGTTTAGCAACATTCAAACTTGCTCCCAGGCCTGTCGAAATTCCCCAACTAAGGACACAT
ACTTTGTCAAGAGGAGCAAGAGGGTTAATTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E553527] | SGN-U579420 | Tomato 200607 | Build 2 | 345 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T355932 [Download] [View] | Facility Assigned ID: ctsc1g17 |
| Submitter: Koni | Sequencing Facility: Cornell |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.973 | Expected Error Rate: 0.0010 | Quality Trim Threshold: 20.5 |
Working
