EST details — SGN-E647540

Search information 
Request: 647540Match: SGN-E647540
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C444617Clone name: cccs30w23n3
nocartOrdering Not Available
Library Name: cccs30wOrganism: Coffea canephora

Tissue: Endosperm and perisperm
Development Stage: 30 week after pollination

There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C444617 [cccs30w23n3] Trace: SGN-T471469 EST: SGN-E647750 Direction: 5' Facility: Cornell
Clone: SGN-C444617 [cccs30w23n3] Trace: SGN-T468480 EST: SGN-E644761 Direction: 5' Facility: Cornell
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E647540Length: 728 bp (1024 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E647540 [] (trimmed) CAGGGGAAGGGCACCAAGTCGATGTCTGTCATTGCAGGATCTTGCGGTTATATCGCACCAGACATTTCTGTAGCGGATTTCCAAATTCAAGAACT
CCATGGGCTTTGATGTACGATAGTTAGTAGTACCAATGAGAAATAAAGGGATGCGGACTGTTGGCCCCTAACTCATTTTCAGGAGTTGTATATTA
GAAACTAATATGCATATACCCTGAGGGTGAATGAGAAGAGTGATATATACAGCTTTGGTGTGGTTATACTAGAGTTGATCACAGGGAGGCTCCCA
GTTGATCCCGAGTATGGTGAGAAGGATTTGGTTAAGTGGGTGTGCACCACTTTGGACCAAAAGGGCATTGATCATGTAATTGACACAAAACTGGA
TTCTTGGTTCAAGGAAGAGATATGTAAAGTCCTCAATGTAGGTCTCCTCTGCACCAGTCCCCTTCCTATAAATCGTCCTTCGATGAGACGAGTGG
TAAAAATGTTGCAAGAAGTAGGAGGTGGAAACCAACTCAAAAATGGTAGGACAAAAGATGGCAAATTGACGCCTTATTACTATGAAGATGCCTCG
GATCATGGAAGTGTAGCTTGAGGTGGTTTATACATTTGTTACAAGAGACTCAGAAACTGAAATCAGAAGAAGAAGAACCTTCCTCCTCTTCATCA
GCTAAATATATGATGTGAGTTTTTACAGGTGTTTGTTTCCAAAGAGGGACGAGGGTCCCGACT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E647540] SGN-U619066 Coffea canephora Build 3 3 ESTs assembled
[SGN-E647540] SGN-U630382 Coffee species Build 1 4 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T471259 [Download] [View] Facility Assigned ID: cccs30w23n3_2.i
Submitter: None Sequencing Facility: Cornell
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.000 Expected Error Rate: 0.0000 Quality Trim Threshold: 15