EST details — SGN-E670871
| Search information |
| Request: 670871 | Match: SGN-E670871 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C459538 | Clone name: cccs46w17d3 |
| ||
| Library Name: cccs46w | Organism: Coffea canephora |
Tissue: Endosperm and perisperm
Development Stage: 46 week after pollination
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
No additional reads found.[Show information hierarchy]
| Sequence |
| Sequence Id: SGN-E670871 | Length: 901 bp (1259 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E670871 [] (trimmed)
CCTCTCCGCTTTCGCAGCAATTCGATTCTGATCTTCATCAATGGCGCTGCCGAATCAGCAGACCGTGGATTATCCCAGTTTCAAGCTTGTAATTG
TTGGTGACGGTGGAACTGGGAAAACTACATTTGTGAAGAGGCATCTTACTGGTGAATTTGAGAAGAAATATGAACCAACTATTGGTGTGGAAGTT
CATCCATTGGACTTCTTTACAAACTGTGGGAAGATTCGTTTCTATTGCTGGGATACAGCTGGACAGGAGAAATTTGGTGGGCTTCGGGATGGATA
CTATATCCATGGACAATGTGCTATAATCATGTTTGATGTAACAGCTCGATTAACGTACAAGAATGTTCCTACATGGCACCGTGATCTTTGTCGGG
TTTGCGAGAACATACCAATTGTACTTTGTGGAAACAAGGTTGATGTGAAGAATAGGCAAGTGAAGGCAAAGCAGGTTACCTTCCACCGCAAAAAG
AACTTGCAGTACTATGAGATTTCAGCAAAGAGCAATTACAACTTTGAGAAGCCTTTCCTATATCTTGCAAGGAAACTCGCTGGGGACCCTAACTT
GCATTTTGTCGAGTCCCCTGCCCTTTTACCCCCCGAGGTTCAGATTGACTTGGTTGCACAGCAACAGCATGAGGCTGAGCTTGCTCAAGCTGCTG
CTCAGCCACTCCCTGACGACGATGATGACACTTTCGAGTAAGGAGCAGTTGGATGGAGCTTGGAGTGCCTCTGTTATGGAATTTGTGCCATTTTT
CATCGATAGGTTTCCTTGCCATCTATAGGTTTCCAGAATTTTGGTCTCATATTAGAAAGTATCGAGGGATTTTTCATCGATCAGTTTAGGGATTT
TCCAACTTTCCTGATGTTTTGCCTTGATTTGTTTGTGAGAAGGACC
TTGGTGACGGTGGAACTGGGAAAACTACATTTGTGAAGAGGCATCTTACTGGTGAATTTGAGAAGAAATATGAACCAACTATTGGTGTGGAAGTT
CATCCATTGGACTTCTTTACAAACTGTGGGAAGATTCGTTTCTATTGCTGGGATACAGCTGGACAGGAGAAATTTGGTGGGCTTCGGGATGGATA
CTATATCCATGGACAATGTGCTATAATCATGTTTGATGTAACAGCTCGATTAACGTACAAGAATGTTCCTACATGGCACCGTGATCTTTGTCGGG
TTTGCGAGAACATACCAATTGTACTTTGTGGAAACAAGGTTGATGTGAAGAATAGGCAAGTGAAGGCAAAGCAGGTTACCTTCCACCGCAAAAAG
AACTTGCAGTACTATGAGATTTCAGCAAAGAGCAATTACAACTTTGAGAAGCCTTTCCTATATCTTGCAAGGAAACTCGCTGGGGACCCTAACTT
GCATTTTGTCGAGTCCCCTGCCCTTTTACCCCCCGAGGTTCAGATTGACTTGGTTGCACAGCAACAGCATGAGGCTGAGCTTGCTCAAGCTGCTG
CTCAGCCACTCCCTGACGACGATGATGACACTTTCGAGTAAGGAGCAGTTGGATGGAGCTTGGAGTGCCTCTGTTATGGAATTTGTGCCATTTTT
CATCGATAGGTTTCCTTGCCATCTATAGGTTTCCAGAATTTTGGTCTCATATTAGAAAGTATCGAGGGATTTTTCATCGATCAGTTTAGGGATTT
TCCAACTTTCCTGATGTTTTGCCTTGATTTGTTTGTGAGAAGGACC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E670871] | SGN-U617160 | Coffea canephora | Build 3 | 17 ESTs assembled | |
| [SGN-E670871] | SGN-U637121 | Coffee species | Build 1 | 43 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T483401 [Download] [View] | Facility Assigned ID: cccs46w17d3.i |
| Submitter: None | Sequencing Facility: Cornell |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.000 | Expected Error Rate: 0.0000 | Quality Trim Threshold: 15 |
Working
