EST details — SGN-E686854
| Search information |
| Request: 686854 | Match: SGN-E686854 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C464236 | Clone name: cccs46w31a18 |
| ||
| Library Name: cccs46w | Organism: Coffea canephora |
Tissue: Endosperm and perisperm
Development Stage: 46 week after pollination
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
No additional reads found.[Show information hierarchy]
| Sequence |
| Sequence Id: SGN-E686854 | Length: 919 bp (1244 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E686854 [] (trimmed)
GGACATTTAAGACAATGACAACTTTCATGCCTCCACCTCCTGCAGCTACTTTCTTAGCATTTCATCCTCAAGATAACAACATTATTGCTATTGGC
ATGGATGACTCAACTATTCAGATATACAACGTTCGTGTAGATGAGGTGAAAAGCAAGCTAAAAGGCCATTCTAAAAGAATTACTGGCCTTGCTTT
CTCCCATGTACTAAATGTGTTAGTCTCATCAGGAGCAGATGCGCAGCTATGTGTGTGGAACTCGGATGGATGGGAAAAGCAAAAGGCTAGATTTT
TGCAAATTCCTTCAGGCAGGACACCTATGGCACAATCGGACGCTCGTGTGCAGTTCCATCAGGATCAGATTCACTTCCTGGTTGTCCACGAGACT
CAGCTTGCCATATATGAGACAACAAAACTGGAATGTGTCAAGCAGTGGCTTCCGCGTGAATCTGGTGCTCCAATTTCTCATGCAACATTCTCTTG
CGATAGCCAGCTGGTGTATGCCAGCTTCTTAGATGCTGCAGTGTGCGTGTTCACAGCAACTCACTTACAAATGAGATGTCGTATAAGTCCTCCTG
CTTATCTTCCCAACAGTATAAGCAACTCCAATGTCCAGCCACTTGTAATTGCTGCACATCCACAGGATCCAAACCAGTTTGCTATAGGTTTATCA
GATGGTGCGGTCCATGTTTTTGAGCCCCTTGAATCTGATGGCAGATGGGGTGTCCCTCCACTGGTCGATAATGGATCTGCAAGCAGTTTACCAGC
GAGTGCAGCTGGAGGCTTCAGCTCTGATCAGGCGCAGAGATGACTGGATAGACGGGGAAATGCCAATTTTACCTGGTTTTGTTTCTTGGCAAGCT
CCATTCTGTTGCACAAGAAGTAGAAAAATTTGAATCCCTTAAATGGTTGATTTCAACTATTACT
ATGGATGACTCAACTATTCAGATATACAACGTTCGTGTAGATGAGGTGAAAAGCAAGCTAAAAGGCCATTCTAAAAGAATTACTGGCCTTGCTTT
CTCCCATGTACTAAATGTGTTAGTCTCATCAGGAGCAGATGCGCAGCTATGTGTGTGGAACTCGGATGGATGGGAAAAGCAAAAGGCTAGATTTT
TGCAAATTCCTTCAGGCAGGACACCTATGGCACAATCGGACGCTCGTGTGCAGTTCCATCAGGATCAGATTCACTTCCTGGTTGTCCACGAGACT
CAGCTTGCCATATATGAGACAACAAAACTGGAATGTGTCAAGCAGTGGCTTCCGCGTGAATCTGGTGCTCCAATTTCTCATGCAACATTCTCTTG
CGATAGCCAGCTGGTGTATGCCAGCTTCTTAGATGCTGCAGTGTGCGTGTTCACAGCAACTCACTTACAAATGAGATGTCGTATAAGTCCTCCTG
CTTATCTTCCCAACAGTATAAGCAACTCCAATGTCCAGCCACTTGTAATTGCTGCACATCCACAGGATCCAAACCAGTTTGCTATAGGTTTATCA
GATGGTGCGGTCCATGTTTTTGAGCCCCTTGAATCTGATGGCAGATGGGGTGTCCCTCCACTGGTCGATAATGGATCTGCAAGCAGTTTACCAGC
GAGTGCAGCTGGAGGCTTCAGCTCTGATCAGGCGCAGAGATGACTGGATAGACGGGGAAATGCCAATTTTACCTGGTTTTGTTTCTTGGCAAGCT
CCATTCTGTTGCACAAGAAGTAGAAAAATTTGAATCCCTTAAATGGTTGATTTCAACTATTACT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E686854] | SGN-U613441 | Coffea canephora | Build 3 | 9 ESTs assembled | |
| [SGN-E686854] | SGN-U631667 | Coffee species | Build 1 | 17 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T488099 [Download] [View] | Facility Assigned ID: cccs46w31a18.i |
| Submitter: None | Sequencing Facility: Cornell |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.000 | Expected Error Rate: 0.0000 | Quality Trim Threshold: 15 |
Working
