EST details — SGN-C172815
| Search information |
| Request: 172815 | Match: SGN-C172815 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C172815 | Clone name: TUS-14-I5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172815 is on microarray TOM1 spot ID 1-1-4.1.20.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10992 [cLEC-6-N19] | Trace: SGN-T24014 | EST: SGN-E202353 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172815 [TUS-14-I5] | Trace: SGN-T195581 | EST: SGN-E399523 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172815 [TUS-14-I5] | Trace: SGN-T195749 | EST: SGN-E394423 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172815 [TUS-14-I5] | Trace: SGN-T195749 | EST: SGN-E398945 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172815 [TUS-14-I5] | Trace: SGN-T199436 | EST: SGN-E398110 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393985 | Length: 634 bp (839 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393985 [] (trimmed)
AAAATCTTTTTTTCTCTGCTGTAAGGCGGAAGAAAGAGAAGGACTGTTATTTGAAGAACGGAAGTTGTGTGCTTCAGGAGCTTCTTGCTTTATGC
GACGGAAATTGCAGAGTTCCCATCCGTTACTTCTCTGCCATAGAGATCAATAATGCAATAAAAAACTCTCAAACCAAAATGGAACTTGCTGATGT
GTCTATGGTTACGGGATTACTAGGCAACCGCCCTGTATTAGTTAGGTTCAATAAATGGACCTACAATATCCATCGAGATATAGCGATTACTGCTC
AGATGAGTCATCTGAAGAATGTGCTGAGACTAATCGGTTGCTGTCTAGAGTTTGAAGAGCCAGTTATCGTGTATGAATATGTTAAAGGTATATCT
CTTAGCGATCTACTTTTCAAAAAGGGTAATCTTAATAGAAAATCGTCCTTGTCTTGGGGAAGTAGATTACGAGTTGCACGTGATGTCGCTTCTGC
AGTCGTTTTCCTCCATACTGAATTTACTACGCCAATCATCCACAGAAATATAAAGTCATCTAAAGTGATAATTGATGAGATCTGCGGTGTTGCCA
AAATAGTAGACTTCTCGCTCTCCATATCACTGCCTCCAGGGGAATTGGAGGTACAAGATCAGGC
GACGGAAATTGCAGAGTTCCCATCCGTTACTTCTCTGCCATAGAGATCAATAATGCAATAAAAAACTCTCAAACCAAAATGGAACTTGCTGATGT
GTCTATGGTTACGGGATTACTAGGCAACCGCCCTGTATTAGTTAGGTTCAATAAATGGACCTACAATATCCATCGAGATATAGCGATTACTGCTC
AGATGAGTCATCTGAAGAATGTGCTGAGACTAATCGGTTGCTGTCTAGAGTTTGAAGAGCCAGTTATCGTGTATGAATATGTTAAAGGTATATCT
CTTAGCGATCTACTTTTCAAAAAGGGTAATCTTAATAGAAAATCGTCCTTGTCTTGGGGAAGTAGATTACGAGTTGCACGTGATGTCGCTTCTGC
AGTCGTTTTCCTCCATACTGAATTTACTACGCCAATCATCCACAGAAATATAAAGTCATCTAAAGTGATAATTGATGAGATCTGCGGTGTTGCCA
AAATAGTAGACTTCTCGCTCTCCATATCACTGCCTCCAGGGGAATTGGAGGTACAAGATCAGGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393985] | SGN-U563913 | Tomato 200607 | Build 2 | 26 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195311 [Download][View] | Facility Assigned ID: FA0AAD2AE03RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.979 | Expected Error Rate: 0.0022 | Quality Trim Threshold: 14.5 |
Working
