EST details — SGN-C172988

Search information 
Request: 172988Match: SGN-C172988
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C172988Clone name: TUS-14-P10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172988 is on microarray TOM1 spot ID 1-1-7.4.20.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C14431 [cLEC-7-O18] Trace: SGN-T25440 EST: SGN-E202158 Direction: 5' Facility: TIGR
Clone: SGN-C172988 [TUS-14-P10] Trace: SGN-T188051 EST: SGN-E374743 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E374744Length: 625 bp (918 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E374744 [] (trimmed) TAAACATCCTAATCTGTCGGTTAAAAATTCATCTGCGTAATTTGAAAGACGAATTTTTTTTAAAAAAAATCAATGGCGACGGCTATGGGAATGAT
GAGGAATGTTGGGGGTTATGGTTCTGCCTCTGCTTCATGGATTCGTTTGAAGAATCGCGCAAACAAAAAGACGAAGAGGAGTGAGAATGTTAAAT
TTGGGGTTACTTGTGTTTATTCACCTTCTCTGAGTGATCCGTACAAGACCTTGAGGATTCAACCTGATGCTTCTGAATCTGATGTTAGAAAGGCT
TTTAGACAGCTTGCTCTTCAGTATCACCCGGATGTATGCAGAGGAAGTAATTGCGGTATACAATTTCACCAAATCAATGATGCATACGATACTGT
GATGAGTAACTTGAGAGGTGAAACAAAGAATGCAGAAATGGAGATTTACGAAGAATATGACGATGACGATGAAGCCATGAGAGGAGTGAATGATC
CAGATTATGATATGTGGGAAGAATGGATGGGATGGGAAGGAGCAGGCATTCGGGATTATTCGTCTCACATCAATCCTTATATATAATTTTTTAAA
AAATAAACGTGGTGGTATCTGGATTAGCTCACATGCCCGTTTTATGTATTATCTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E374744] SGN-U580038 Tomato 200607 Build 2 24 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T188052 [Download][View] Facility Assigned ID: FA0AAD2DH05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.954 Expected Error Rate: 0.0018 Quality Trim Threshold: 14.5