EST details — SGN-C173070

Search information 
Request: 173070Match: SGN-C173070
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C173070Clone name: TUS-15-C20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173070 is on microarray TOM1 spot ID 1-1-5.3.20.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C1383 [cLEC-11-O1] Trace: SGN-T25541 EST: SGN-E201594 Direction: 5' Facility: TIGR
Clone: SGN-C173070 [TUS-15-C20] Trace: SGN-T188709 EST: SGN-E375855 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E375856Length: 606 bp (898 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E375856 [] (trimmed) AAATTTCTTTCCTTTGCTTTTATAACATTAATAAGAAAAATTAATTAATTACACATAACATAACATTGCAGCAGTTTTGGCTTAAGGACAAATTC
TCTTCCTTTTCCTCTTTGCTTTCAGGTCGGTTTTGCGCAGATAGATCATTGCCAGGGGAGGTTGGTGCCCCTTGAGAAATGGATTTTGTGGAGTT
GAAGAGACGGAGCAGCACTTCTAGGAGACTGCTCTTGCTTGCTGGCATTGCTGCGATTTGTTTATTTATATTCAGAAATTCATCGAGTTTTAGTA
CCTCTGTCAAGTTCTCTCAACACGAACCAGGTGTAACTCATGTGTTAGTGACGGGAGGTGCTGGCTTCATTGGTTCTCATGCGTCCCTTCGTCTC
CTAAAGGATTCGTATCGTGTAACTATAGTGGACAATCTTTCCCGTGGAAATATGGGCTCGGTAAAAGTTCTCCAGGAACTTTTCCCAGAACCAGG
GCGACTTCAGTTTATTTATGCTGATTTGGGAGATGCTGCTGCTGTTAACAAAATCTTTTCACAAAATGCATTTGATGCTGTGATGCATTTTGCAG
CTGTTGCATATGTTGGTGAAAGTACTCAAGAACCGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E375856] SGN-U573008 Tomato 200607 Build 2 21 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T188710 [Download][View] Facility Assigned ID: FA0AAD3BB10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.968 Expected Error Rate: 0.0008 Quality Trim Threshold: 14.5