EST details — SGN-C173539

Search information 
Request: 173539Match: SGN-C173539
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C173539Clone name: TUS-16-G9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173539 is on microarray TOM1 spot ID 1-1-8.3.18.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C3349 [cLEC-20-E3] Trace: SGN-T27565 EST: SGN-E205783 Direction: 5' Facility: TIGR
Clone: SGN-C173539 [TUS-16-G9] Trace: SGN-T192853 EST: SGN-E391527 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E391528Length: 667 bp (865 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E391528 [] (trimmed) GCTGAAATTCTTACCAATCTTTTGTTTCTATCAAATACTGAAAGTCCAAACTTTTTGAGGTTTCAGCAAATCACAGGAGTTCTCTAAGATGCTTT
CAAGAATTGCTAAAATCCCACTAGTGAGTTCACATCCTGAGGTTTATGAACCATGTGATGATTCGTTTGCATTGGTCGATGCATTATTAGCTGAT
CGAACTAACATGTTACAACAGAAACCTTCAATTTGTATGGAAATTGGTTGTGGTAGTGGTTACGTTATTACATCCCTTGCTGTTATGCTTGGAGA
CGAAGGATTTGTTCCATACTATATTGCAACAGACATCAACCCTCATGCAATAAGGGTGACTCGTGAGACCATGGATGCTCATGGGGTTTATGCAG
AGTTGGTAAACACTGATATTACCTCTGGACTTGAGAAGCGCTTGGCAAGATCAGTTGATGTGCTGGTTGTGAACCCTCCTTATGTTCCTACACCT
GAAGACGAAGTTGGTTTTGAAGGCATCACTTCGGCATGGGCTGGAGGGGAGAATGGTCGAAGCGTTATTGATAAAATACTGCCTGCTGCCAACAA
TCTTTTGTCAGAGAAAGGCTGGTTATATATGGTCACGCTTACTGCTAATAAACCCTCAGATATATGTCTTGAGATGAGAAAGAAGGGTTATGCAT
CT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E391528] SGN-U572612 Tomato 200607 Build 2 6 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T192854 [Download][View] Facility Assigned ID: FA0AAD4AD05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.974 Expected Error Rate: 0.0028 Quality Trim Threshold: 14.5