EST details — SGN-C175020

Search information 
Request: 175020Match: SGN-C175020
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C175020Clone name: TUS-20-E2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175020 is on microarray TOM1 spot ID 1-1-7.1.14.20 [Order] [Tomato Microarray Database]
See unigene SGN-U575308 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C23863 [cLED-6-I5] Trace: SGN-T50215 EST: SGN-E233229 Direction: 5' Facility: TIGR
Clone: SGN-C175020 [TUS-20-E2] Trace: SGN-T189897 EST: SGN-E377686 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E377687Length: 522 bp (930 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E377687 [] (trimmed) CCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGT
CTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATT
ATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATT
GGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTT
CCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACA
CAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377687] SGN-U575308 Tomato 200607 Build 2 23 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189898 [Download][View] Facility Assigned ID: FA0AAD8BC01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.967 Expected Error Rate: 0.0006 Quality Trim Threshold: 12.5