EST details — SGN-C175483
Search information |
Request: 175483 | Match: SGN-C175483 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C175483 | Clone name: TUS-21-H9 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175483 is on microarray TOM1 spot ID 1-1-8.4.13.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C15343 [cLED-11-K19] | Trace: SGN-T51293 | EST: SGN-E235283 | Direction: 5' | Facility: TIGR |
Clone: SGN-C175483 [TUS-21-H9] | Trace: SGN-T190527 | EST: SGN-E377765 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E377766 | Length: 696 bp (949 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E377766 [] (trimmed)
AGATCGAAACCAGTAGAGAATAGGATTGGAAGTTTCTTATTCATGAAGTAAGTAGAATACAAACTAGAAAGACATTTTGAATTAAAGCTCTTATT
TCAGTGGAAATTAAAAGAAGTAGTAGCAGCAGCAGCATAGATTTGATATATCCTTAATGCTTAATTAGCTTCTGTTTTGAAGGGCTCCAATGAAG
CGTGGTACACTGATTTCTTGCTGAGGTAATGTGGCATAAAATCGATTCCCCAATGGAAGGGTTTGAACTGTGGAGGATTCTCAGGACCAACAAGT
GCTTTTGCAGGTTCAACAATCTCATGTGGGCAAATAAAAGTACCAATGGAGGTTCGTGACTCAGTTGTGTTTGTCACCACATGATGTGCAACACT
AGTTAGCTTTCCATTGCTATATACCGTAATTGGTAAACCAGAATTAACCACAAATGCATTGCGAATAGGCTGCACACCAATCCATTTGTCATCCT
TCAATATTTGAAGACCATAGACTTCTTGTTGGATAATGGTTATGAGATTAGGATCACAATGTCCACCAACTCCCAAAGTTAAACTTGGATTTGGA
CATGCTGGATAGTGATTCACAAGCATTCTCTGCCCAAGTTCTTTGTCAAAGAACCCTGCCTCCAAACCTAGCCCTTCACTTAACATACCCAAGAT
AACTTTGCTCACCCTTCTCAATTCATCACCA
TCAGTGGAAATTAAAAGAAGTAGTAGCAGCAGCAGCATAGATTTGATATATCCTTAATGCTTAATTAGCTTCTGTTTTGAAGGGCTCCAATGAAG
CGTGGTACACTGATTTCTTGCTGAGGTAATGTGGCATAAAATCGATTCCCCAATGGAAGGGTTTGAACTGTGGAGGATTCTCAGGACCAACAAGT
GCTTTTGCAGGTTCAACAATCTCATGTGGGCAAATAAAAGTACCAATGGAGGTTCGTGACTCAGTTGTGTTTGTCACCACATGATGTGCAACACT
AGTTAGCTTTCCATTGCTATATACCGTAATTGGTAAACCAGAATTAACCACAAATGCATTGCGAATAGGCTGCACACCAATCCATTTGTCATCCT
TCAATATTTGAAGACCATAGACTTCTTGTTGGATAATGGTTATGAGATTAGGATCACAATGTCCACCAACTCCCAAAGTTAAACTTGGATTTGGA
CATGCTGGATAGTGATTCACAAGCATTCTCTGCCCAAGTTCTTTGTCAAAGAACCCTGCCTCCAAACCTAGCCCTTCACTTAACATACCCAAGAT
AACTTTGCTCACCCTTCTCAATTCATCACCA
Unigenes |
Current Unigene builds | |||||
[SGN-E377766] | SGN-U581131 | Tomato 200607 | Build 2 | 214 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T190528 [Download][View] | Facility Assigned ID: FA0AAD9CD05RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.966 | Expected Error Rate: 0.0035 | Quality Trim Threshold: 12.5 |