EST details — SGN-C176017

Search information 
Request: 176017Match: SGN-C176017
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C176017Clone name: TUS-22-N15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176017 is on microarray TOM1 spot ID 1-1-2.2.11.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C18704 [cLED-24-F21] Trace: SGN-T54706 EST: SGN-E240809 Direction: 5' Facility: TIGR
Clone: SGN-C176017 [TUS-22-N15] Trace: SGN-T180726 EST: SGN-E367977 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E367978Length: 556 bp (880 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E367978 [] (trimmed) GTCATGTCTCCCTTCTCCTTCTCATCATCAATAACTTTCATTTTTTTTTTGTTCATCCCAATGAATTATATTTATTGTTTTTTTACCTTATATTA
ATTAATTCATCTTTATATAGGCAAATATTATTTGGTGTTTGTTATAATGATGAAGATTAATTTTGGTAAAGTTTTAGATTGTTTTAGTACTATTT
CTTCTTCTGGATCTTGTTTTTGTATCAATGAATATGGAGTTCATGATGATGATGGATTTGAAAAGAAGCCATTGATGAATAATAGTTTATCAAAT
CAAGATGATGAACCTAAGTTGATGAGATTGAAGGATGTTATTAATGTAGGACCTCCAACACTAGCTTTTCAATTGAAGCCTAAGATTGTGGTGCT
AAGAGTTTCCATACATTGCAATGGTTGTGCAAGGAAAGTTGAAAAACACATCTCCAAAATGGAAGGGGTAGATATGTACCAAGTAGATTTGGAGA
CCAAGAAAGTGGTTGTTATTGGAGACATAATACCTTTTTAAGTGTTGGAAAGTGTTTCAAAAATTGTCAAAAAAGTTAAAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E367978] SGN-U573084 Tomato 200607 Build 2 4 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T180727 [Download][View] Facility Assigned ID: FA0AAD10CG08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.915 Expected Error Rate: 0.0056 Quality Trim Threshold: 14.5