EST details — SGN-C176017
Search information |
Request: 176017 | Match: SGN-C176017 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C176017 | Clone name: TUS-22-N15 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C176017 is on microarray TOM1 spot ID 1-1-2.2.11.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C18704 [cLED-24-F21] | Trace: SGN-T54706 | EST: SGN-E240809 | Direction: 5' | Facility: TIGR |
Clone: SGN-C176017 [TUS-22-N15] | Trace: SGN-T180726 | EST: SGN-E367977 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E367978 | Length: 556 bp (880 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E367978 [] (trimmed)
GTCATGTCTCCCTTCTCCTTCTCATCATCAATAACTTTCATTTTTTTTTTGTTCATCCCAATGAATTATATTTATTGTTTTTTTACCTTATATTA
ATTAATTCATCTTTATATAGGCAAATATTATTTGGTGTTTGTTATAATGATGAAGATTAATTTTGGTAAAGTTTTAGATTGTTTTAGTACTATTT
CTTCTTCTGGATCTTGTTTTTGTATCAATGAATATGGAGTTCATGATGATGATGGATTTGAAAAGAAGCCATTGATGAATAATAGTTTATCAAAT
CAAGATGATGAACCTAAGTTGATGAGATTGAAGGATGTTATTAATGTAGGACCTCCAACACTAGCTTTTCAATTGAAGCCTAAGATTGTGGTGCT
AAGAGTTTCCATACATTGCAATGGTTGTGCAAGGAAAGTTGAAAAACACATCTCCAAAATGGAAGGGGTAGATATGTACCAAGTAGATTTGGAGA
CCAAGAAAGTGGTTGTTATTGGAGACATAATACCTTTTTAAGTGTTGGAAAGTGTTTCAAAAATTGTCAAAAAAGTTAAAC
ATTAATTCATCTTTATATAGGCAAATATTATTTGGTGTTTGTTATAATGATGAAGATTAATTTTGGTAAAGTTTTAGATTGTTTTAGTACTATTT
CTTCTTCTGGATCTTGTTTTTGTATCAATGAATATGGAGTTCATGATGATGATGGATTTGAAAAGAAGCCATTGATGAATAATAGTTTATCAAAT
CAAGATGATGAACCTAAGTTGATGAGATTGAAGGATGTTATTAATGTAGGACCTCCAACACTAGCTTTTCAATTGAAGCCTAAGATTGTGGTGCT
AAGAGTTTCCATACATTGCAATGGTTGTGCAAGGAAAGTTGAAAAACACATCTCCAAAATGGAAGGGGTAGATATGTACCAAGTAGATTTGGAGA
CCAAGAAAGTGGTTGTTATTGGAGACATAATACCTTTTTAAGTGTTGGAAAGTGTTTCAAAAATTGTCAAAAAAGTTAAAC
Unigenes |
Current Unigene builds | |||||
[SGN-E367978] | SGN-U573084 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T180727 [Download][View] | Facility Assigned ID: FA0AAD10CG08RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.915 | Expected Error Rate: 0.0056 | Quality Trim Threshold: 14.5 |