EST details — SGN-C176621
Search information |
Request: 176621 | Match: SGN-C176621 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C176621 | Clone name: TUS-24-G19 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C176621 is on microarray TOM1 spot ID 1-1-6.3.9.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C27127 [cLEF-42-K1] | Trace: SGN-T60722 | EST: SGN-E247678 | Direction: 5' | Facility: TIGR |
Clone: SGN-C176621 [TUS-24-G19] | Trace: SGN-T192959 | EST: SGN-E391633 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E391634 | Length: 651 bp (849 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E391634 [] (trimmed)
AATGGCTCTCTGCCTCTCAGCTTCAAAATCCATTGCTTTCAACATAAGATGCAGCAATTCTACAAGTGATCCTCTTCCGTCTTCCTCTGTTTTCA
AATCCCTCAGAATTCCCCGTTTCTGGCCATGGCAAAAGGTAAAGATGGGACCTTTGACAGTATCTCCAATGGGGTTTGGTACTTGGGCATGGGGC
AATCAGCTTCTCTGGGGATATCAAGATTCCATGGACTCTGAACTTCAGCAGACTTTCAATCTTGCTGTGGAGAATGGGATTAACCTATTTGATAC
AGCTGATTCTTATGGGACTGGAAAGTTAAATGGACAAAGTGAGAAACTTCTTGGAAAATTCATTCGCGAGTTTCCAGGAGACAAGCAAGTAAAGA
ATGACATCGTTATTGCAACAAAATTTGCAGCAGAGGGGTGGCGCCTAACACCTGGACAATTTGTGAATGCTTGCAAGTCTTCTCTGGAAAGAATG
GAAATCGAGCAAATTGGAATTGGACAATTGCATTGGTCAACTGCAAATTATGCACCTCTGCAGGAACGAGCTCTTTGGGATGGTTTAGTTGCCAT
GTACGAGAAGGGTTTAGTTCGTGCAGTAGGAGTGAGCAACTATGGACCAAAAGCAGCTGCTGAAATATACAAATATCTTGA
AATCCCTCAGAATTCCCCGTTTCTGGCCATGGCAAAAGGTAAAGATGGGACCTTTGACAGTATCTCCAATGGGGTTTGGTACTTGGGCATGGGGC
AATCAGCTTCTCTGGGGATATCAAGATTCCATGGACTCTGAACTTCAGCAGACTTTCAATCTTGCTGTGGAGAATGGGATTAACCTATTTGATAC
AGCTGATTCTTATGGGACTGGAAAGTTAAATGGACAAAGTGAGAAACTTCTTGGAAAATTCATTCGCGAGTTTCCAGGAGACAAGCAAGTAAAGA
ATGACATCGTTATTGCAACAAAATTTGCAGCAGAGGGGTGGCGCCTAACACCTGGACAATTTGTGAATGCTTGCAAGTCTTCTCTGGAAAGAATG
GAAATCGAGCAAATTGGAATTGGACAATTGCATTGGTCAACTGCAAATTATGCACCTCTGCAGGAACGAGCTCTTTGGGATGGTTTAGTTGCCAT
GTACGAGAAGGGTTTAGTTCGTGCAGTAGGAGTGAGCAACTATGGACCAAAAGCAGCTGCTGAAATATACAAATATCTTGA
Unigenes |
Current Unigene builds | |||||
[SGN-E391634] | SGN-U576762 | Tomato 200607 | Build 2 | 6 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T192960 [Download][View] | Facility Assigned ID: FA0AAD12AD10RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.968 | Expected Error Rate: 0.0060 | Quality Trim Threshold: 14.5 |