EST details — SGN-C176873

Search information 
Request: 176873Match: SGN-C176873
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C176873Clone name: TUS-25-B7
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176873 is on microarray TOM1 spot ID 1-1-2.2.8.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C28066 [cLEF-46-H17] Trace: SGN-T61643 EST: SGN-E247232 Direction: 5' Facility: TIGR
Clone: SGN-C176873 [TUS-25-B7] Trace: SGN-T181951 EST: SGN-E368998 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E368999Length: 740 bp (938 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E368999 [] (trimmed) AGGAAATGGAGAAGTGGTTTGAAGAATTTCAGGTAATGGGAATAAAGCCAGATGTTATGACATTTAACATTTTAATCAAGTCATATGGAAGAGCT
GGCATGTACCAGAAAATGGAGTGTGTACTTGATTTCATGAGGAATTGGTTCTATTCTCCAACAGTTGTGACTTACAATATCATCATTGAGACATT
GGGGAAAGCTTGCCTCATTAAGAACATGGAACAGTTTTTCCTACAGATGAAGCATGAAGGGGTGAAGCCAAGTTCATTCACTTATTGCTCTCTTG
TCAGTGCGTATAGTAGAGCTGCACTTATGGAAAATGTTGATTCAATCATGAGGCAAGTTGAGAATTCAGATGTAGTTCTAGATACTCCTTTTTTC
AATTGCATCATCAGTGCTTACGGTCAAGTTGGTGATATAGAGAGGATGGTGGCATTGTTCTTGGAAATGAAGGTCAGAAAATGTAAACCAGACTA
CATCACATTTTCTACCATGATTCAGGCGTACAATTCACAAGGAATGACTGAAGCTGCAATGGACTTGAAGACAGAAATGATTACTTCTTGTGAAT
CAAATGAATTGATCAGCAGCTAGTACAATCTATCTGCTACCGAAGGGAACCGTTCACTTGGAATTCTGTTCATCAATCTCAATGTTGTGAAAGTG
GGCAGAGTGTTATCTGCATGTGAGCTTAAGGATGATATAGAAATCCGTTAATCAGATGGCATGGATCCAAGGAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E368999] SGN-U573314 Tomato 200607 Build 2 12 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T181952 [Download][View] Facility Assigned ID: FA0AAD13CA04RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.960 Expected Error Rate: 0.0045 Quality Trim Threshold: 14.5