EST details — SGN-C178237

Search information 
Request: 178237Match: SGN-C178237
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C178237Clone name: TUS-28-K3
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C178237 is on microarray TOM1 spot ID 1-1-6.3.4.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C65043 [cLEM-8-C23] Trace: SGN-T85310 EST: SGN-E271759 Direction: 5' Facility: TIGR
Clone: SGN-C178237 [TUS-28-K3] Trace: SGN-T183310 EST: SGN-E370383 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E370384Length: 642 bp (875 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E370384 [] (trimmed) GCACAAACCTTACAAAAGCATCTTCTTTACGTTACACATTTGCCTTTCTGCCTCCCATCATTTTTTTTCCTCTCCAAATTATCAAAATTATTGCC
CCAGTTTCTCTCTGGTTTGGAACTGCATTTATCTATGGTTTAATTGAATTAATAAATTTTTTTTCTCTACTCTGTACCCGTCAATTTAGGTACAG
TTTCAGTTTTCGCAACAATTTTTTGGGATTTTGGCTCTGGCTTAGAGACATAACAAAAAGCGGTTATGGATCGAGAAGGAGGATCAGCCGGATCT
TGTTATTATTCAGTTCTAGGGGTACGCAACGACGCCTCCTGCTCCGACATTCGCTCAGCTTATCGGAAACTAGCTCTGAAATGGCACCCGGATAG
GTGGGCGAAGAATCCAGCGCTGGCCGGTGAAGCGAAACTCCGATTTCAGAAAATCCAAGAGGCTTATTCAGTTCTCTCCGATCAAGACAAGAGGT
CAATGTACGACGCCGGTTTCCTCGATATGTTTGAGGAAGATGAAGGAATGGGTGATTTCCTGCATGATTTGATAAACCGAATGGATCAAAATGTT
GGAGCAGCGGAGGAGAGTCTAGAGGATTTGCAGAAGACGTTTGTGGATATGTTTGGTAGAGATTTAGCAAAG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E370384] SGN-U575113 Tomato 200607 Build 2 16 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T183311 [Download][View] Facility Assigned ID: FA0AAD16AF02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.978 Expected Error Rate: 0.0033 Quality Trim Threshold: 14.5