Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-C178270

Search information 
Request: 178270Match: SGN-C178270
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C178270Clone name: TUS-28-L12
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C178270 is on microarray TOM1 spot ID 1-1-5.4.4.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C65093 [cLEM-8-E9] Trace: SGN-T85315 EST: SGN-E271764 Direction: 5' Facility: TIGR
Clone: SGN-C178270 [TUS-28-L12] Trace: SGN-T183663 EST: SGN-E370731 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E370732Length: 613 bp (908 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E370732 [] (trimmed) GAATCAATCGACCTAACAATATTTAAGTTTTTTAAAACTCTATTTAAGGACGGGTATAGGTAGTTCACTTTTCTTCCCTACACAACTTACATATT
TTACGTACTCCATGGTTGAATCAAGTGTGTGAAAATGCTGATGAGGCTTCTGATTATCCTGTTTTTGGGTCTGGTGGCGTTACATGATCATAATG
GTGTAGTACAAGGCATTGAAGTGGCTGTGTTGAGGAAATTGGCAGCCAAAAACAATGTAACATGTTTGTTGGTGTTTGGAGATTCAAGTGTAGAT
CCTGGAAACAACAACCATCTTTCTACAATAAACAAGGCTAATTACTTGCCTTATGGGATGGACCTTAACTCTCAACCTACTGGCAGGTTCTCTAA
TGGAAAACTTGCCACAGATTTTATTGTGGAGGCACTTGGTTACGTAAATATGACCAGAGCGTTTCTAGACCCACAAATAAACAAGGTGGATATGC
TACACGGTATTAGTTTTGCTTCAACTGGCTCTGGTTATGATGATCTCACCGCCAATTTTTCGAATGCAATGACACTAGCGAAGCAAAGAGAGTAT
CTGAGGCACTATGAAATTCACCTTGAGTAAAATGGTGGGAGTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E370732] SGN-U568434 Tomato 200607 Build 2 33 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T183664 [Download][View] Facility Assigned ID: FA0AAD16DF06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.966 Expected Error Rate: 0.0072 Quality Trim Threshold: 14.5