EST details — SGN-C178542
Search information |
Request: 178542 | Match: SGN-C178542 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C178542 | Clone name: TUS-29-G20 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C178542 is on microarray TOM1 spot ID 1-1-5.3.3.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C72185 [cLER-1-G3] | Trace: SGN-T91841 | EST: SGN-E280287 | Direction: 5' | Facility: TIGR |
Clone: SGN-C72185 [cLER-1-G3] | Trace: SGN-T91842 | EST: SGN-E280288 | Direction: 3' | Facility: TIGR |
Clone: SGN-C178542 [TUS-29-G20] | Trace: SGN-T183917 | EST: SGN-E371588 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E371589 | Length: 706 bp (891 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E371589 [] (trimmed)
TTGCAATTGGAGAAAGAAGCTGAAGCTTTGGCTGGACAGGACGATGGTGGTGGAGAGCAACTTGAACGGATCTATGAGCGTTTAGAAGCTATGGA
TGCTGCCACTGCTGAGAAACGTGCTGCTGAAATCTTGTTTGGGCTTGGATTTGATAAGAAAATGCAAGCAAAGAAAACACGTGATTTTTCCGGTG
GCTGGAGGATGAGGATTGCTCTTGCCCGTGCCCTCTTTATGAATCCAACAATTTTGTTGCTTGATGAGCCAACAAACCATCTTGACCTAGAGGCC
TGTGTGTGGTTAGAAGAATCCTTGAAGAACTTTGAGCGCATTCTGGTTGTCATTTCACACTCACAGGATTTTCTCAATGGTGTGTGTACCAATAT
CATCCACATGCAAAACAAGAAGTTAAAACTCTATACAGGTAACTACGACCAATATGTGCAAACCCGTTCAGAGCTGGAAGAAAACCAGATGAAAC
AGTACAAGTGGGAGCAGGAGCAGATTTCTGCAATGAAGGAATACATTGCTCGCTTTGGGCACGGTTCAGCTAAACTAGCCCGTCAAGCACAGAGT
AAAGAGAAGACATTGGCTAAGATGGAGCGTGGTGGGCTTACTGAGAAGGTGGGGAGGGACAGTGTCCTGGTTTTCCGGTTTACTGATGTTCGCAA
ACTTCCTCCTCCAGTTCTACAGTTTTCGAAAGTTGCTTTTG
TGCTGCCACTGCTGAGAAACGTGCTGCTGAAATCTTGTTTGGGCTTGGATTTGATAAGAAAATGCAAGCAAAGAAAACACGTGATTTTTCCGGTG
GCTGGAGGATGAGGATTGCTCTTGCCCGTGCCCTCTTTATGAATCCAACAATTTTGTTGCTTGATGAGCCAACAAACCATCTTGACCTAGAGGCC
TGTGTGTGGTTAGAAGAATCCTTGAAGAACTTTGAGCGCATTCTGGTTGTCATTTCACACTCACAGGATTTTCTCAATGGTGTGTGTACCAATAT
CATCCACATGCAAAACAAGAAGTTAAAACTCTATACAGGTAACTACGACCAATATGTGCAAACCCGTTCAGAGCTGGAAGAAAACCAGATGAAAC
AGTACAAGTGGGAGCAGGAGCAGATTTCTGCAATGAAGGAATACATTGCTCGCTTTGGGCACGGTTCAGCTAAACTAGCCCGTCAAGCACAGAGT
AAAGAGAAGACATTGGCTAAGATGGAGCGTGGTGGGCTTACTGAGAAGGTGGGGAGGGACAGTGTCCTGGTTTTCCGGTTTACTGATGTTCGCAA
ACTTCCTCCTCCAGTTCTACAGTTTTCGAAAGTTGCTTTTG
Unigenes |
Current Unigene builds | |||||
[SGN-E371589] | SGN-U579050 | Tomato 200607 | Build 2 | 129 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T183918 [Download][View] | Facility Assigned ID: FA0AAD17BD10RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.977 | Expected Error Rate: 0.0005 | Quality Trim Threshold: 14.5 |