EST details — SGN-C179379

Search information 
Request: 179379Match: SGN-C179379
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C179379Clone name: TUS-31-J17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C179379 is on microarray TOM1 spot ID 1-1-8.2.2.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C82145 [cLET-1-A6] Trace: SGN-T102603 EST: SGN-E292329 Direction: 5' Facility: TIGR
Clone: SGN-C179379 [TUS-31-J17] Trace: SGN-T185406 EST: SGN-E373268 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E373269Length: 625 bp (895 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E373269 [] (trimmed) GAGAAATTAAGCAATAGAGAAAATGGCAGCAACAGGTAGCTCAGCCACAGTTGTTAGAGCAACTCCATTTTTGGGCCAGACCAAATATGCTAACC
CCCTAAGGGATATAGTTCCTATGGGCTCTGCCAGATTCACCATGAGTAATGATTTGTGGTATGGACCTGACCGTGTCAAGTACTTGGGACCATTT
TCTGCTCAAACTCCTTCATACTTGACTGGAGAATTCCCTGGTGATTACGGATGGGATACTGCTGGTTTATCTGCTGATCCCGAGGCCTTTGCTAA
GAACAGAGCTCTTGAGGTTATCCATGGGAGATGGGCCATGCTTGGAGCTTTTGGTTGCATTACACCAGAAGTTCTTGAAAAATGGGTAAAAGTGG
ACTTCAAAGAACCAGTATGGTTCAAAGCTGGAGCCCAGATCTTCAGTGAAGGTGGGCTGGACTATTTGGGCAACCCAAACCTTGTCCATGCTCAG
AGCATTCTAGCAGTATTGGGCTTCCAAGTTGTACTAATGGGCCTTGTAGAAGGTTTCAGAATTAATGGGCTTCCTGGAGTTGGTGAAGGCAACAA
TCTCTACCCAGGTGGACAGTACTTTGACCCATTGGGCCTAGCAGATGACCCAACA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E373269] SGN-U579843 Tomato 200607 Build 2 157 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T185407 [Download][View] Facility Assigned ID: FA0AAD19CE09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.970 Expected Error Rate: 0.0021 Quality Trim Threshold: 14.5