EST details — SGN-C179578
Search information |
Request: 179578 | Match: SGN-C179578 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C179578 | Clone name: TUS-32-B24 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179578 is on microarray TOM1 spot ID 1-1-1.2.1.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C82433 [cLET-1-O19] | Trace: SGN-T102421 | EST: SGN-E292147 | Direction: 5' | Facility: TIGR |
Clone: SGN-C82433 [cLET-1-O19] | Trace: SGN-T102598 | EST: SGN-E292324 | Direction: 3' | Facility: TIGR |
Clone: SGN-C179578 [TUS-32-B24] | Trace: SGN-T186289 | EST: SGN-E372808 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E372809 | Length: 717 bp (863 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E372809 [] (trimmed)
AAAACCCTACAGCTCCCTCTTACGAAGCTTAGCTTCGAGTTTTTCTTCTCATCTTTTCGATAATGGCTTTACCAAACCAGCAAACTGTAGACTAT
CCAAGCTTCAAGCTTGTTATTGTGGGAGATGGAGGAACTGGCAAGACAACATTTGTCAAAAGGCATCTCACTGGTGAATTCGAGAAAAAATACGA
ACCCACTATTGGTGTGGAGGTTCATCCACTAGACTTCTTCACAAATTGTGGGAAGATTCGGTTTTATTGCTGGGATACAGCTGGACAAGAGAAGT
TTGGAGGTCTCAGAGATGGTTACTACATTCATGGGCAATGTGCAATTATCATGTTTGATGTTACAGCCCGTCTGACCTACAAGAATGTTCCTACA
TGGCATAGAGATCTTTGTAGGGTTTGTGAAAACATCCCCATTGTTCTCTGTGGAAACAAAGTTGATGTCAAGAACAGGCAGGTTAAGGCTAAGCA
AGTTACCTTCCACAGGAAGAAAAATTTGCAATACTATGAGATCTCAGCAAAGAGTAACTACAACTTTGAGAAGCCTTTTCTGTACCTTGCCAGAG
AGCTTGCTGGGGATGGTAATCTTCACTTTGTGGAGTCACCTGCACTTGCTCCCCCAGAAGTACACATCGACTTAGCTGCACAGGCACTGCATGAA
GAAGAGCTTCAACAAGCCGCCAATCAGCCACTTCCAGATGACGATGACGAAG
CCAAGCTTCAAGCTTGTTATTGTGGGAGATGGAGGAACTGGCAAGACAACATTTGTCAAAAGGCATCTCACTGGTGAATTCGAGAAAAAATACGA
ACCCACTATTGGTGTGGAGGTTCATCCACTAGACTTCTTCACAAATTGTGGGAAGATTCGGTTTTATTGCTGGGATACAGCTGGACAAGAGAAGT
TTGGAGGTCTCAGAGATGGTTACTACATTCATGGGCAATGTGCAATTATCATGTTTGATGTTACAGCCCGTCTGACCTACAAGAATGTTCCTACA
TGGCATAGAGATCTTTGTAGGGTTTGTGAAAACATCCCCATTGTTCTCTGTGGAAACAAAGTTGATGTCAAGAACAGGCAGGTTAAGGCTAAGCA
AGTTACCTTCCACAGGAAGAAAAATTTGCAATACTATGAGATCTCAGCAAAGAGTAACTACAACTTTGAGAAGCCTTTTCTGTACCTTGCCAGAG
AGCTTGCTGGGGATGGTAATCTTCACTTTGTGGAGTCACCTGCACTTGCTCCCCCAGAAGTACACATCGACTTAGCTGCACAGGCACTGCATGAA
GAAGAGCTTCAACAAGCCGCCAATCAGCCACTTCCAGATGACGATGACGAAG
Unigenes |
Current Unigene builds | |||||
[SGN-E372809] | SGN-U580136 | Tomato 200607 | Build 2 | 82 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T186290 [Download][View] | Facility Assigned ID: FA0AAD20DA12RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.978 | Expected Error Rate: 0.0053 | Quality Trim Threshold: 14.5 |