Notice: After server upgrades, BLAST should be back now. Apologies for any inconvenience.

EST details — SGN-C181898

Search information 
Request: 181898Match: SGN-C181898
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C181898Clone name: TUS-38-C16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C181898 is on microarray TOM1 spot ID 1-1-1.3.10.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C6562 [cLEC-35-M8] Trace: SGN-T30833 EST: SGN-E210485 Direction: 5' Facility: TIGR
Clone: SGN-C181898 [TUS-38-C16] Trace: SGN-T194785 EST: SGN-E393459 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398019Length: 341 bp (879 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398019 [] (trimmed) GTTATCTCATGTGCTTGCTTTCTTGCTTCTTGCATCACTTTTTCAATCACTGATGGCAAGAGATTTGATCAGTGATGGCATAGAAGTAGTGAAAT
TTCCAGTGGAAGATGATGGAGAATTTGTATTTTGCCCAGGTAAGCTATCATGGCCTGAACTTGTTGGGAAATCAGCAGGATATGCAAAAGAAGTA
ATTCAAAAGGAAAATCCCATAGTTCATGATGTTAGGCTTCTATTTCCTGGTATGATTAGGCCACTTAATTATGTTTGTGGCAGAGTTTTTCTGGT
TGTTAACTTTAAACACATTGTTCGAGTTACTCCCTCTATGGGTTACTAACATTATT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398019] SGN-U584916 Tomato 200607 Build 2 37 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199345 [Download][View] Facility Assigned ID: FA0AAD26BB08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.944 Expected Error Rate: 0.0040 Quality Trim Threshold: 14.5