EST details — SGN-E243277
Search information |
Request: 243277 | Match: SGN-E243277 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C25470 | Clone name: cLEF-12-J19 |
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Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C180353 is on microarray TOM1: SGN-S1-1-2.3.19.4
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C180353 [TUS-34-C7] | Trace: SGN-T199140 | EST: SGN-E397814 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E243277 | Length: 444 bp (749 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E243277 [] (trimmed)
GGCTAGCTTCTGTTGAAGCACAAGTTGTACTTGTGTTTCATCTCAAATCGATCATCAAAATACAATAATTAGGTGAAATAGCTTCTCTGTTTGAA
GCTTTACTCTCCAGTTTCTTCTGATTCGCGGAGAGGCAAAATGGGTCAAGCCTTTCGCAAGCTGTTCGATACTTTCTTCGGCAATTCTGAGATGA
GGGTTGTAATGCTTGGCCTTGATGCGGCTGGAAAAACAACTATATTATACAAACTGCACATAGGAGAAGTTCTATCAACAGTTCCTACTATCGGA
TTCAACGTGGAAAAAGTACAGTACAAAAATGTAATTTTTACTGTGTGGGATGTTGGTGGACAAGAGAAATTAAGGCCACTGTGGAGACATTACTT
CAATAACACAGATGGATTGATTTATGTCGTCGACTCTTTGGATCGAGAGAGGATTGGAAAGGCA
GCTTTACTCTCCAGTTTCTTCTGATTCGCGGAGAGGCAAAATGGGTCAAGCCTTTCGCAAGCTGTTCGATACTTTCTTCGGCAATTCTGAGATGA
GGGTTGTAATGCTTGGCCTTGATGCGGCTGGAAAAACAACTATATTATACAAACTGCACATAGGAGAAGTTCTATCAACAGTTCCTACTATCGGA
TTCAACGTGGAAAAAGTACAGTACAAAAATGTAATTTTTACTGTGTGGGATGTTGGTGGACAAGAGAAATTAAGGCCACTGTGGAGACATTACTT
CAATAACACAGATGGATTGATTTATGTCGTCGACTCTTTGGATCGAGAGAGGATTGGAAAGGCA
Unigenes |
Current Unigene builds | |||||
[SGN-E243277] | SGN-U574089 | Tomato 200607 | Build 2 | 11 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T59474 [Download] [View] | Facility Assigned ID: TMGBU58TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.960 | Expected Error Rate: 0.0108 | Quality Trim Threshold: 14.5 |