EST details — SGN-E246335
Search information |
Request: 246335 | Match: SGN-E246335 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C26455 | Clone name: cLEF-40-H2 |
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Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176325 is on microarray TOM1: SGN-S1-1-6.3.10.1
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C176325 [TUS-23-K11] | Trace: SGN-T180999 | EST: SGN-E369425 | Direction: 3' | Facility: INRA |
Clone: SGN-C176325 [TUS-23-K11] | Trace: SGN-T181000 | EST: SGN-E369426 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E246335 | Length: 566 bp (890 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E246335 [] (trimmed)
GTGTGTTGGTTTACATAGATTTGATGTTTCTTCTGGTTGCTGTTTCACTGGTTTGCTAAGGAAAAAGTGTGAATCTTCTCACACTACAATACTAT
CTCAAATCCTCTTTGAGACTGTAAGCTTGGTATACCATAGCTCTAATGCAGGGGCAACAGAATACCGTTGGTTCGCTCCAAGAAACTTTAGGTTT
TAATCATGGTTCGACGCCTAGTGAAGGTGGTGTAGATCAACAGATATGTTGGAGTAATTTGCAAAATTCTGCACAGAATCACCTGCCTGATTATA
TGGTTTCTTCAAATGCGACTGATATTCCATTCTTCAATCCTATGAGCCAAGAGAGACAGAATGTAACCAGGGGGAGTTTAGGAGAATCCAGCTCC
TCTATTGCACCGAATTCTGCAAGTTGGAGTGAACAGAAAGCAGATCATGGATGGTCATCCGCAATGACTACATATAATGGACCTTCACTAATCTG
TAATGAACAGCAATGTGGGTCTTCTAACATTATGTCATTGAATGATTTTTTTTCTCAAGGTTCTAGTTCTAGCACCATTCCTCATGAAATC
CTCAAATCCTCTTTGAGACTGTAAGCTTGGTATACCATAGCTCTAATGCAGGGGCAACAGAATACCGTTGGTTCGCTCCAAGAAACTTTAGGTTT
TAATCATGGTTCGACGCCTAGTGAAGGTGGTGTAGATCAACAGATATGTTGGAGTAATTTGCAAAATTCTGCACAGAATCACCTGCCTGATTATA
TGGTTTCTTCAAATGCGACTGATATTCCATTCTTCAATCCTATGAGCCAAGAGAGACAGAATGTAACCAGGGGGAGTTTAGGAGAATCCAGCTCC
TCTATTGCACCGAATTCTGCAAGTTGGAGTGAACAGAAAGCAGATCATGGATGGTCATCCGCAATGACTACATATAATGGACCTTCACTAATCTG
TAATGAACAGCAATGTGGGTCTTCTAACATTATGTCATTGAATGATTTTTTTTCTCAAGGTTCTAGTTCTAGCACCATTCCTCATGAAATC
Unigenes |
Current Unigene builds | |||||
[SGN-E246335] | SGN-U563918 | Tomato 200607 | Build 2 | 12 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T60187 [Download] [View] | Facility Assigned ID: TMGGD37TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.977 | Expected Error Rate: 0.0050 | Quality Trim Threshold: 14.5 |