EST details — SGN-E247627
| Search information |
| Request: 247627 | Match: SGN-E247627 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C27070 | Clone name: cLEF-42-H18 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176590 is on microarray TOM1: SGN-S1-1-5.2.9.15
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176590 [TUS-24-F12] | Trace: SGN-T193432 | EST: SGN-E392106 | Direction: 3' | Facility: INRA |
| Clone: SGN-C176590 [TUS-24-F12] | Trace: SGN-T193433 | EST: SGN-E392107 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E247627 | Length: 670 bp (999 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E247627 [] (trimmed)
GAATTTTTCTCCTTCTCCTTCTCCGTTCAATCGAATTTGTCAGCCATGTCTGACGAGGAGCATCAATTTGAGTCTAAGGCTGATGCCGGAGCATC
AAAAACTTACCCTCAACAAGCTGGTACTATTCGTAAGAACGGTTATATCGTCATCAAAGGCCGTCCATGCAAGGTTGTGGAAGTCTCTACATCCA
AAACTGGCAAGCACGGTCACGCCAAATGTCATTTCGTTGCTATTGACATCTTCACTGGGAAGAAGCTTGAGGATATTGTCCCCTCTTCACACAAT
TGTGATGTGCCCCATGTTAATCGTACAGATTATCAGCTTATTGACATCTCTGAAGATGGATTTGTGAGTCTGCTTACTGACAATGGTAACACCAA
GGATGACCTCAGGCTTCCTACTGATGAAAATCTGCTTTCACTGATCAAGGACGGGTTTGCCGAGGGTAAGGACCTCGTTGTGTCTGTTATGTCAG
CTATGGGTGAGGAACAGATTAATGCTTTGAAGGATATTGGCCCCAAGTGATCTCTTGATTGGATGGATTGCTTGACGCGATGGTTCTTTACGACC
TTGAGTGAGATAGATATTTATAGTCATGGAAAAAAATTGTGATCTTATGGAATATTCGTATCATGATTTATGGACCATTGTGAGTTAAATTTTTA
TTTAT
AAAAACTTACCCTCAACAAGCTGGTACTATTCGTAAGAACGGTTATATCGTCATCAAAGGCCGTCCATGCAAGGTTGTGGAAGTCTCTACATCCA
AAACTGGCAAGCACGGTCACGCCAAATGTCATTTCGTTGCTATTGACATCTTCACTGGGAAGAAGCTTGAGGATATTGTCCCCTCTTCACACAAT
TGTGATGTGCCCCATGTTAATCGTACAGATTATCAGCTTATTGACATCTCTGAAGATGGATTTGTGAGTCTGCTTACTGACAATGGTAACACCAA
GGATGACCTCAGGCTTCCTACTGATGAAAATCTGCTTTCACTGATCAAGGACGGGTTTGCCGAGGGTAAGGACCTCGTTGTGTCTGTTATGTCAG
CTATGGGTGAGGAACAGATTAATGCTTTGAAGGATATTGGCCCCAAGTGATCTCTTGATTGGATGGATTGCTTGACGCGATGGTTCTTTACGACC
TTGAGTGAGATAGATATTTATAGTCATGGAAAAAAATTGTGATCTTATGGAATATTCGTATCATGATTTATGGACCATTGTGAGTTAAATTTTTA
TTTAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E247627] | SGN-U578250 | Tomato 200607 | Build 2 | 45 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T60671 [Download] [View] | Facility Assigned ID: TMGGL45TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.983 | Expected Error Rate: 0.0102 | Quality Trim Threshold: 14.5 |
Working
