EST details — SGN-E248880
Search information |
Request: 248880 | Match: SGN-E248880 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C28880 | Clone name: cLEF-49-I10 |
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Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C177036 is on microarray TOM1: SGN-S1-1-7.1.8.3
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C177036 [TUS-25-I2] | Trace: SGN-T181825 | EST: SGN-E369333 | Direction: 3' | Facility: INRA |
Clone: SGN-C177036 [TUS-25-I2] | Trace: SGN-T181826 | EST: SGN-E369334 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E248880 | Length: 512 bp (924 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E248880 [] (trimmed)
CGAGACGGACTGTGACCGGTGGAAAATTGACGGTGAAAGGGAACCGTGGATCCGGCATGGCTCCGGGAGAAAGTAGCGATGAAGACGAAGAAGAC
GGTGGTGCTCGTTTCTCCTCAGCCTAAAAAGGACGCCGGCGCCGGCGCCGGCGGTGGAGATAAAAAACCCGATGAGAAAAAGGCAGAAGAGAAAA
AACCTGAAGATAAGAAGCCTAAAGAGCCACAAGTAAGTACAGTGGTGTTGAAGATTCGATTGCATTGTGATGGGTGTGCACACAAAATAAAGAGA
ATTATAAAGAAAATTGATGGGGTAGAAGAAGTCAAAGTAGATTCGGAAAAAGATTTGGTCAATGTTAAGGGTACAATGGACTTGAAGGAATTAAT
TCCTTATTTGAAAGATAAATTGAAAAGAAATGTAGAAATCATCCCACCTAAGAAAGATGATGGAGGTGGCGAAAAGAAAGAAGGCGGTGGCGGTG
GTGAGAAGAAAGAGAAAGAAGGGGGTGAACAAAAAGC
GGTGGTGCTCGTTTCTCCTCAGCCTAAAAAGGACGCCGGCGCCGGCGCCGGCGGTGGAGATAAAAAACCCGATGAGAAAAAGGCAGAAGAGAAAA
AACCTGAAGATAAGAAGCCTAAAGAGCCACAAGTAAGTACAGTGGTGTTGAAGATTCGATTGCATTGTGATGGGTGTGCACACAAAATAAAGAGA
ATTATAAAGAAAATTGATGGGGTAGAAGAAGTCAAAGTAGATTCGGAAAAAGATTTGGTCAATGTTAAGGGTACAATGGACTTGAAGGAATTAAT
TCCTTATTTGAAAGATAAATTGAAAAGAAATGTAGAAATCATCCCACCTAAGAAAGATGATGGAGGTGGCGAAAAGAAAGAAGGCGGTGGCGGTG
GTGAGAAGAAAGAGAAAGAAGGGGGTGAACAAAAAGC
Unigenes |
Current Unigene builds | |||||
[SGN-E248880] | SGN-U565780 | Tomato 200607 | Build 2 | 13 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T62388 [Download] [View] | Facility Assigned ID: TMGHL53TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.927 | Expected Error Rate: 0.0067 | Quality Trim Threshold: 14.5 |