EST details — SGN-E248975
Search information |
Request: 248975 | Match: SGN-E248975 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C29001 | Clone name: cLEF-49-N24 |
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Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C177108 is on microarray TOM1: SGN-S1-1-7.4.8.3
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C177108 [TUS-25-L2] | Trace: SGN-T182068 | EST: SGN-E369579 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E248975 | Length: 449 bp (1057 bp untrimmed) |
Status: Current Version | Direction: 5' |
>SGN-E248975 [] (trimmed)
GTTAGTTTTTGCATTTTCCGGTCTTCTCCTGCACTGTTCCGTCTCTTTTTTTCTCCGCAAATTCATATACTGAAGCAATCTTCAAGAATCATTTT
TCTTCAAAAACCCAAATTTCTCAAACTGAAGAAAAGGAAGAGAAACGAAGCAGTAGTAGAGAAGATGGGGGTTGATTATTACAAAGTATTGGGTG
TTGATAAGAACGCTACAGATGATGATTTGAAGAAAGCTTATAGAAAACTTGCCATGAAATGGCATCCGGATAAGAACCCACAAAACAAAAAAGAA
GCTGAAGCTAAGTTCAAACAGATCTCTGAAGCGTATGATGTGCTTAGCGACTCCCAGAAAAAAGCTGTGTATGACCAGTATGGTGAAGAAGGGCT
CAAGGGCGGGGTACCACCACCTGGAGCTGGTGGTCCTGGTGCCGGTTCAACCTACTTTTCTACTTGGGA
TCTTCAAAAACCCAAATTTCTCAAACTGAAGAAAAGGAAGAGAAACGAAGCAGTAGTAGAGAAGATGGGGGTTGATTATTACAAAGTATTGGGTG
TTGATAAGAACGCTACAGATGATGATTTGAAGAAAGCTTATAGAAAACTTGCCATGAAATGGCATCCGGATAAGAACCCACAAAACAAAAAAGAA
GCTGAAGCTAAGTTCAAACAGATCTCTGAAGCGTATGATGTGCTTAGCGACTCCCAGAAAAAAGCTGTGTATGACCAGTATGGTGAAGAAGGGCT
CAAGGGCGGGGTACCACCACCTGGAGCTGGTGGTCCTGGTGCCGGTTCAACCTACTTTTCTACTTGGGA
Unigenes |
Current Unigene builds | |||||
[SGN-E248975] | SGN-U570099 | Tomato 200607 | Build 2 | 38 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T62483 [Download] [View] | Facility Assigned ID: TMGHN84TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.968 | Expected Error Rate: 0.0071 | Quality Trim Threshold: 14.5 |