EST details — SGN-E249006
Search information |
Request: 249006 | Match: SGN-E249006 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C28930 | Clone name: cLEF-49-K17 |
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Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C177069 is on microarray TOM1: SGN-S1-1-6.2.8.7
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C177069 [TUS-25-J11] | Trace: SGN-T181988 | EST: SGN-E369035 | Direction: 3' | Facility: INRA |
Clone: SGN-C177069 [TUS-25-J11] | Trace: SGN-T181989 | EST: SGN-E369036 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E249006 | Length: 607 bp (855 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E249006 [] (trimmed)
TTTTGATCATAATGTGACGAATCGAATTTTTACTAGCAAGAATAAAATAATAATTCAGACAGTCTATCAAACTAAACTATAAAAACTTTTCGATA
TGTAACATTATGACATGACATATTACAATAAATTTCTTACAATGGCTCTACCAACATCAGAAAGTTCATGAACATCTATATTTAATTTAGAAAGT
GGTGAATATTTAATAGTTGTAGCTTTAAAATATTCTTCACATTCTTGTGCATCACCAGAAGAACCAACCATTCCATCTTCTGCAAATTTTGGATC
ACCTTTTGTTAATGCTTCTATTGCTTCTGGCATACTTGCTGTTAAAATTACCTTATACGAAAAGGCACAATTCTTCAAAGGATCTTTCCAAGCTT
GAGGAGGATTAGAATGCCTAAGTTTTGAAATAGTATTAGCAGCTTGATTAGCTTTAGATTTAATAGCATCAACCATAATTAATGCTAATGTTGTA
ATATCTCCTGCTTTTTCACTTCTTTTGTCTAAAGACAAAGTTTTCACACACAAATTATAATTTGGTGTGTTCTTGCATGTTGTCTCTACTAGATT
ATTATTCCCACTTGTTACTAGCAACATAGCAAGAAAC
TGTAACATTATGACATGACATATTACAATAAATTTCTTACAATGGCTCTACCAACATCAGAAAGTTCATGAACATCTATATTTAATTTAGAAAGT
GGTGAATATTTAATAGTTGTAGCTTTAAAATATTCTTCACATTCTTGTGCATCACCAGAAGAACCAACCATTCCATCTTCTGCAAATTTTGGATC
ACCTTTTGTTAATGCTTCTATTGCTTCTGGCATACTTGCTGTTAAAATTACCTTATACGAAAAGGCACAATTCTTCAAAGGATCTTTCCAAGCTT
GAGGAGGATTAGAATGCCTAAGTTTTGAAATAGTATTAGCAGCTTGATTAGCTTTAGATTTAATAGCATCAACCATAATTAATGCTAATGTTGTA
ATATCTCCTGCTTTTTCACTTCTTTTGTCTAAAGACAAAGTTTTCACACACAAATTATAATTTGGTGTGTTCTTGCATGTTGTCTCTACTAGATT
ATTATTCCCACTTGTTACTAGCAACATAGCAAGAAAC
Unigenes |
Current Unigene builds | |||||
[SGN-E249006] | SGN-U579697 | Tomato 200607 | Build 2 | 34 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T62514 [Download] [View] | Facility Assigned ID: TMGHK69TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.929 | Expected Error Rate: 0.0135 | Quality Trim Threshold: 12.5 |