EST details — SGN-E270407
Search information |
Request: 270407 | Match: SGN-E270407 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C62010 | Clone name: cLEM-1-C9 |
| ||
Library Name: cLEM | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit
Development Stage: immature green fruit
Microarray: Alias clone SGN-C177728 is on microarray TOM1: SGN-S1-1-3.1.6.16
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C177728 [TUS-27-E22] | Trace: SGN-T182935 | EST: SGN-E370560 | Direction: 3' | Facility: INRA |
Clone: SGN-C177728 [TUS-27-E22] | Trace: SGN-T182936 | EST: SGN-E370561 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E270407 | Length: 462 bp (1282 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E270407 [] (trimmed)
TTTAAGCAAATAATCAGCATTGAAACCGGGGCTTCCAGCAGGGGGTGGAATAACATGAACTTAATCAGCACACATCTTTATACAAGAAAATGTGG
CTAGCATACAAGTAATAAAGTCAAATAAATAACAAATTGGCACAACAAAACAATTTGCTTAAAATCTATGAGCTAAACCAGTTCATCTCCTGAAA
AACAGCTCAAAGCATTGGAGCTCGTGACTTATCCGAGCCTCGGGCAAACTTAATTGCATTGGATCATCATCTCGGTGTGGTTTTACGCAAGTCTC
AACTCATATTCACCAGCCATGGTAATATATCGCACCCAAGGAAGAGCCTGATAACCACTTTTTTCAATTATCTTCAAGTAGCGAACCTGTATACC
CGAAACTGTAAAATATGGTATCTCAAATTTCACACGTATAGGAGATTTTCTTTCAGGAACTGCTTCTTCTGCTGAAATGCTG
CTAGCATACAAGTAATAAAGTCAAATAAATAACAAATTGGCACAACAAAACAATTTGCTTAAAATCTATGAGCTAAACCAGTTCATCTCCTGAAA
AACAGCTCAAAGCATTGGAGCTCGTGACTTATCCGAGCCTCGGGCAAACTTAATTGCATTGGATCATCATCTCGGTGTGGTTTTACGCAAGTCTC
AACTCATATTCACCAGCCATGGTAATATATCGCACCCAAGGAAGAGCCTGATAACCACTTTTTTCAATTATCTTCAAGTAGCGAACCTGTATACC
CGAAACTGTAAAATATGGTATCTCAAATTTCACACGTATAGGAGATTTTCTTTCAGGAACTGCTTCTTCTGCTGAAATGCTG
Unigenes |
Current Unigene builds | |||||
[SGN-E270407] | SGN-U582355 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T83780 [Download] [View] | Facility Assigned ID: TGFAA17TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.956 | Expected Error Rate: 0.0064 | Quality Trim Threshold: 20.5 |