EST details — SGN-E276484
| Search information |
| Request: 276484 | Match: SGN-E276484 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C67212 | Clone name: cLEN-17-N16 |
| ||
| Library Name: cLEN | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: red ripe to over-ripe
Microarray: Alias clone SGN-C183019 is on microarray TOM1: SGN-S1-1-8.2.3.8
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183019 [TUS-41-B9] | Trace: SGN-T195164 | EST: SGN-E393838 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183019 [TUS-41-B9] | Trace: SGN-T195808 | EST: SGN-E394482 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183019 [TUS-41-B9] | Trace: SGN-T195808 | EST: SGN-E398838 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183019 [TUS-41-B9] | Trace: SGN-T200139 | EST: SGN-E398839 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E276484 | Length: 617 bp (894 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E276484 [] (trimmed)
GAAAAACAATCGTTTAATGGCAAATCCGTTGCGATTGTATCTGACATGCATAAGAAATACGCTTGAGGCAGCAATGTGTCTTCAGAATTTCCCAT
GCCAAGAAGTAGAGAGGCATAACAAACCAGAGGTTGAATTAAAGTATGACTTCATGCTGCTGTCTCATTTTACTCGAAGTTAATGATGTCGGTTA
GCATTACATAATTTTTCTCTTCTGTAATTCATCAAATGTCTTCACAGCGTGTGGATTCCTATAATCAAGAAGAATTTCATGTGTATTCTTTTTAC
ATATAGTATGACTGGATCCTAAAACATTAACTTTTGACTTGCATACACATATCACTTTCTGCAGCAGAACTTAATATTTTACTAAAATGCTATTG
TTGAGTTCTCATCTCTTTACGCAGAGAAACTTATACTGAATGCTTTTTATGGGTTAGAGGAATCGACGTGCAGCATTGATAAAATAAGAAAAATC
TTACAACACACGTTGACTCATTGCTCCCTTTTATTTGTTACCTGCAAAGTGTGTAGATCAGAATAATAATGTTTTTCTCATTTGGTATGTTCTAC
AGGACAAGCCCAGAACTTCTTCTTAATCCTATTACGATTTGTAGAAA
GCCAAGAAGTAGAGAGGCATAACAAACCAGAGGTTGAATTAAAGTATGACTTCATGCTGCTGTCTCATTTTACTCGAAGTTAATGATGTCGGTTA
GCATTACATAATTTTTCTCTTCTGTAATTCATCAAATGTCTTCACAGCGTGTGGATTCCTATAATCAAGAAGAATTTCATGTGTATTCTTTTTAC
ATATAGTATGACTGGATCCTAAAACATTAACTTTTGACTTGCATACACATATCACTTTCTGCAGCAGAACTTAATATTTTACTAAAATGCTATTG
TTGAGTTCTCATCTCTTTACGCAGAGAAACTTATACTGAATGCTTTTTATGGGTTAGAGGAATCGACGTGCAGCATTGATAAAATAAGAAAAATC
TTACAACACACGTTGACTCATTGCTCCCTTTTATTTGTTACCTGCAAAGTGTGTAGATCAGAATAATAATGTTTTTCTCATTTGGTATGTTCTAC
AGGACAAGCCCAGAACTTCTTCTTAATCCTATTACGATTTGTAGAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E276484] | SGN-U576050 | Tomato 200607 | Build 2 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T90905 [Download] [View] | Facility Assigned ID: TRRCP80TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.956 | Expected Error Rate: 0.0024 | Quality Trim Threshold: 14.5 |
Working
