EST details — SGN-E280340
| Search information |
| Request: 280340 | Match: SGN-E280340 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C72360 | Clone name: cLER-1-O9 |
| ||
| Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178680 is on microarray TOM1: SGN-S1-1-3.1.4.20
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C72360 [cLER-1-O9] | Trace: SGN-T91893 | EST: SGN-E280339 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C178680 [TUS-29-M14] | Trace: SGN-T184014 | EST: SGN-E371685 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178680 [TUS-29-M14] | Trace: SGN-T184015 | EST: SGN-E371686 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E280340 | Length: 575 bp (818 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E280340 [] (trimmed)
GCCCCCCCTCGAGCAAATTCATACTATCAAGTCTTCAAGGTTAACCGATGATGGTGGTTTCTGCAATCATGGAGGTAACGACGTATGGGTCCATA
TTTGAGGCTGGCCTTCTGTCCTCAAAGTATCCCTTGCCTGCCTTCTCTGTGTCTCTTCCAACACGGACAGATGCACCACGGTTTGCAACCCCCCA
TTTGAATGTGTTGATGTTGGCTGTTTCGTGCTTTCCAGTGAGACGACGCTCGTTGCCTTCACCATATGCAGCTATGTGTTCTTTGTGCTTCAAGC
CAAGCTTCTCAATAGCCTTTAAGATTATTTCATAGCCTCCGTCTTCCCTCATCGACTTGGTGCTGTAATTTGTGTGAGCACCTGCACCATTCCAG
TCGCCCGGAATAGGCTTGGGGTCGAATGACACGACCACCCCAGCAATCTCTGCAATCCTCTCTAGAATGTAACGAGCTACCCACACTTCATCACC
AGCTGAGATGCCAACAGAAGGTCCAACTTGAAATTCCCACTGTCCCGGCATGACTTCACCATTGATCCCGCTGATGTTAATCCCAGCATAGAGAC
AAGCC
TTTGAGGCTGGCCTTCTGTCCTCAAAGTATCCCTTGCCTGCCTTCTCTGTGTCTCTTCCAACACGGACAGATGCACCACGGTTTGCAACCCCCCA
TTTGAATGTGTTGATGTTGGCTGTTTCGTGCTTTCCAGTGAGACGACGCTCGTTGCCTTCACCATATGCAGCTATGTGTTCTTTGTGCTTCAAGC
CAAGCTTCTCAATAGCCTTTAAGATTATTTCATAGCCTCCGTCTTCCCTCATCGACTTGGTGCTGTAATTTGTGTGAGCACCTGCACCATTCCAG
TCGCCCGGAATAGGCTTGGGGTCGAATGACACGACCACCCCAGCAATCTCTGCAATCCTCTCTAGAATGTAACGAGCTACCCACACTTCATCACC
AGCTGAGATGCCAACAGAAGGTCCAACTTGAAATTCCCACTGTCCCGGCATGACTTCACCATTGATCCCGCTGATGTTAATCCCAGCATAGAGAC
AAGCC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E280340] | SGN-U577193 | Tomato 200607 | Build 2 | 71 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T91894 [Download] [View] | Facility Assigned ID: TPRAA89TV |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.978 | Expected Error Rate: 0.0015 | Quality Trim Threshold: 20.5 |
Working
