EST details — SGN-E293503
Search information |
Request: 293503 | Match: SGN-E293503 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C81238 | Clone name: cLET-15-D16 |
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Library Name: cLET | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4-6 weeks
Microarray: Alias clone SGN-C184709 is on microarray TOM1: SGN-S1-1-6.4.14.16
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C184709 [TUS-45-H19] | Trace: SGN-T198700 | EST: SGN-E397374 | Direction: 3' | Facility: INRA |
Clone: SGN-C184709 [TUS-45-H19] | Trace: SGN-T198701 | EST: SGN-E397375 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E293503 | Length: 483 bp (932 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E293503 [] (trimmed)
AAAAAATCCAATCGGAAAATCACCCAATTTCGACCGGAAAAAATGTCGGGAAAAGGAGCTAAGGGTTTGATTATGGGGAAAACAGCGGCTAATAA
GGATAAAGAAAAGGAGAAGAAGAAACCCACTTCTCGTTCTTCTCGTGCTGGTCTACAGTTTCCAGTTGGGCGTATCCATCGACTGCTGAAGGAGA
GAACCAACGCCAATGGGAGAGTGGGTGCTACTGCAGCTGTCTACTCTGCTGCAATCTTGGAGTATCTAACCGCTGAGGTATTGGAGCTGGCTGGA
AATGCAAGCAAGGATTTAAAGGTGAAACGTATCACCCCAAGACATTTGCAGCTAGCAATTCGAGGTGATGAAGAACTTGACACTCTGATCAAAGG
AACAATAGCGGGAGGGGGTGTTATACCACACATTCACAAATCACTCATCAACAAATCTTCTAAGGAGTAATGGAAGCCTGTGTGCTACAACTAGA
CATAGAAA
GGATAAAGAAAAGGAGAAGAAGAAACCCACTTCTCGTTCTTCTCGTGCTGGTCTACAGTTTCCAGTTGGGCGTATCCATCGACTGCTGAAGGAGA
GAACCAACGCCAATGGGAGAGTGGGTGCTACTGCAGCTGTCTACTCTGCTGCAATCTTGGAGTATCTAACCGCTGAGGTATTGGAGCTGGCTGGA
AATGCAAGCAAGGATTTAAAGGTGAAACGTATCACCCCAAGACATTTGCAGCTAGCAATTCGAGGTGATGAAGAACTTGACACTCTGATCAAAGG
AACAATAGCGGGAGGGGGTGTTATACCACACATTCACAAATCACTCATCAACAAATCTTCTAAGGAGTAATGGAAGCCTGTGTGCTACAACTAGA
CATAGAAA
Unigenes |
Current Unigene builds | |||||
[SGN-E293503] | SGN-U576206 | Tomato 200607 | Build 2 | 15 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T106454 [Download] [View] | Facility Assigned ID: TMECH20TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.971 | Expected Error Rate: 0.0131 | Quality Trim Threshold: 12.5 |