EST details — SGN-E300093
Search information |
Request: 300093 | Match: SGN-E300093 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C89062 | Clone name: cLEW-11-I4 |
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Library Name: cLEW | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: mixed roots grown under different nutrient and mineral difficiencies
Development Stage: 4-8 weeks
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C191547 [TUS-63-E17] | Trace: SGN-T343012 | EST: SGN-E542137 | Direction: 3' | Facility: INRA (MWG) |
Clone: SGN-C191547 [TUS-63-E17] | Trace: SGN-T343015 | EST: SGN-E542140 | Direction: 5' | Facility: INRA (MWG) |
Sequence |
Sequence Id: SGN-E300093 | Length: 534 bp (946 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E300093 [] (trimmed)
CACGAGGCTGAAAGTGAAGTGATCAAGTGTAGAGCCATGGCGATTCCTAATATACGGATCCCTTGTCGGCAGTTGTTCATCGACGGTGAATGGAG
AGAACCCCTCAAGAAGAACCGATTACCCATCATCAATCCGGCCAATGAAGAAATTATCGGGTATATTCCCGCAGCTACAGAGGAGGATGTAGATA
TGGCCGTCAAAGCTGCACGGAGTGCGCTTCGTCGAGATGACTGGGGTTCTACTACTGGAGCACAGCGTGCCAAATATCTTCGTGCTATTGCTGCT
AAGGTACTGGAGAAAAAGCCTGAACTGGCTACACTTGAGAACTATCGATAATGGAAAACCCTGGTTCGAGGCTGCCTCGGATATAGATGACATTC
ATAACCTTGATACAGCTGTGGAGTGGACTCTTTTTGGCTGCTTTTGGACAAATGGTCAAATTTGCAGTGCAACTTCACGTCTTATAATACAGGAA
ACAATTGCTCCACAATTTTTGGCCAGGCTTCTTGAGTGGACAAAAAACATCAAAATCTC
AGAACCCCTCAAGAAGAACCGATTACCCATCATCAATCCGGCCAATGAAGAAATTATCGGGTATATTCCCGCAGCTACAGAGGAGGATGTAGATA
TGGCCGTCAAAGCTGCACGGAGTGCGCTTCGTCGAGATGACTGGGGTTCTACTACTGGAGCACAGCGTGCCAAATATCTTCGTGCTATTGCTGCT
AAGGTACTGGAGAAAAAGCCTGAACTGGCTACACTTGAGAACTATCGATAATGGAAAACCCTGGTTCGAGGCTGCCTCGGATATAGATGACATTC
ATAACCTTGATACAGCTGTGGAGTGGACTCTTTTTGGCTGCTTTTGGACAAATGGTCAAATTTGCAGTGCAACTTCACGTCTTATAATACAGGAA
ACAATTGCTCCACAATTTTTGGCCAGGCTTCTTGAGTGGACAAAAAACATCAAAATCTC
Unigenes |
Current Unigene builds | |||||
[SGN-E300093] | SGN-U589845 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T112933 [Download] [View] | Facility Assigned ID: TRDBP50TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.987 | Expected Error Rate: 0.0049 | Quality Trim Threshold: 14.5 |