EST details — SGN-E370187
Search information |
Request: 370187 | Match: SGN-E370187 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C178246 | Clone name: TUS-28-K12 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C178246 is on microarray TOM1 spot ID 1-1-5.3.4.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C65055 [cLEM-8-D13] | Trace: SGN-T85395 | EST: SGN-E271844 | Direction: 5' | Facility: TIGR |
Clone: SGN-C178246 [TUS-28-K12] | Trace: SGN-T183376 | EST: SGN-E370186 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E370187 | Length: 685 bp (896 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E370187 [] (trimmed)
GTGGATGAGACCACAAATCCAATTTCTAGTTTTGCTAATAAGGTCATCGGTTCACTGCCTGTTTTTGGTCTCATAGCCAGAATTGTCAATGAGGA
AGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAAT
TTCGAGATCGACGTGGCAAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAA
ATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGAAGCG
ATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATC
TGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAG
AAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAA
TTTCTTAAGCAAACAGTTTG
AGGTGGTGTTGGAGGCGATTTTATTGATTTTGCGGAGTTCAGGAGGCGAGTCGGTAACAAGTGTTCCATTAATGATTCAAGAGCTTTTTATGAAT
TTCGAGATCGACGTGGCAAGACAGGGGATCCTCTGTATGTGCTACTGTGTTGTTGGTTAGCTGCAGTAGGAGCTGGTTTACTCAAATCTGAGGAA
ATTTTGGAAGGGGTAGCAAGGCTTAGTTTAGCAAATGATATTGAATTTGAAGAACAAAACTTCATCGCAATGATGAATGAAGCAAGGGAGAAGCG
ATCAAAGTTGGGAGCTCCAGCACCTACAATCCCCATGGAATTTCGTGCTGAGAAAGCTCTTGAAGCTATACATGTGTGTTGCTATGGAAGGGATC
TGATTGATGAAGAAGATGAAAAACTGCTAAGTACCATGCTTAATGCTGTCTTTCCTACAGTCGGGCGGCAAAAGGTAGAAATCATTGTCAAAGAG
AAGGCAAAGAGAATGGCAGATGGAACTGAAGAAATCAAATATGAGCCCAAGCAATTATCAAAGAAGCAGTTCAGATGCAAATGAAAGACCTTGAA
TTTCTTAAGCAAACAGTTTG
Unigenes |
Current Unigene builds | |||||
[SGN-E370187] | SGN-U579752 | Tomato 200607 | Build 2 | 32 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T183377 [Download][View] | Facility Assigned ID: FA0AAD16BF06RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.966 | Expected Error Rate: 0.0024 | Quality Trim Threshold: 14.5 |