EST details — SGN-E370926
Search information |
Request: 370926 | Match: SGN-E370926 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C177841 | Clone name: TUS-27-J15 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C177841 is on microarray TOM1 spot ID 1-1-2.2.6.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C64111 [cLEM-5-C21] | Trace: SGN-T85147 | EST: SGN-E271342 | Direction: 5' | Facility: TIGR |
Clone: SGN-C177841 [TUS-27-J15] | Trace: SGN-T1470 | EST: SGN-E378538 | Direction: 5' | Facility: Giov. Lab |
Clone: SGN-C177841 [TUS-27-J15] | Trace: SGN-T183164 | EST: SGN-E370927 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E370926 | Length: 717 bp (938 bp untrimmed) |
Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E370926 [] (trimmed)
AGAAGGAAATATACTCAAAATTTCATAAACTTAAATAAGTTGAGCAGTGACCAAGACTGTGTGTAAAGTGATTTAACCCAGGTAAAGGAACAACC
AACAGAGCTATATGTCATTGCCCATCAAGTAATTTGGTCCCGACATAATTGCTCAATTACTCCACTATCCTCAAAAAGAGGCTAGAGAACCATGA
CAATACCTTCTGTAGCCATATCCAAAACTGGCAAAATGCTGTCCAAAACAAAAATGAAAAAAACTGATGCAAATAAACAAAACTATTTCATCCGT
GCTCATCAAATGCACTCTACTTTCCCTTCTTCTGGGCAGCCTTGGTGACCTTGGCACCAGTTGGGTCCTTCTTGTCAACATTCTTGACAACACCC
ACAGCAACAGTTTGCCTCATGTCCCTCACAGCAAAACGACCCAATGGTGGGTATTCGGCAAAGGTCTCAACAACCATGGGCTTGGTGGGAATCAT
CTTAACCATACCAGCATCACCATTCTTCAAGAACTTAGGCTCCTTCTCAAGTTCCTTACCTGAACGCCTGTCAATCTTGGTCAAGATCTCAGCAA
ACTTGACAGCAATGTGGGAAGTGTGGCAGTCAAGCACTGGTGCATATCCATTTCCAATCTGGCCAGGATGGTTCATGATGATGACCTGGGCAGTG
AAACTGGCTGCCCCCTTAGCTGGGTCATCCTTGGAGTTTGAGGCAACATAAC
AACAGAGCTATATGTCATTGCCCATCAAGTAATTTGGTCCCGACATAATTGCTCAATTACTCCACTATCCTCAAAAAGAGGCTAGAGAACCATGA
CAATACCTTCTGTAGCCATATCCAAAACTGGCAAAATGCTGTCCAAAACAAAAATGAAAAAAACTGATGCAAATAAACAAAACTATTTCATCCGT
GCTCATCAAATGCACTCTACTTTCCCTTCTTCTGGGCAGCCTTGGTGACCTTGGCACCAGTTGGGTCCTTCTTGTCAACATTCTTGACAACACCC
ACAGCAACAGTTTGCCTCATGTCCCTCACAGCAAAACGACCCAATGGTGGGTATTCGGCAAAGGTCTCAACAACCATGGGCTTGGTGGGAATCAT
CTTAACCATACCAGCATCACCATTCTTCAAGAACTTAGGCTCCTTCTCAAGTTCCTTACCTGAACGCCTGTCAATCTTGGTCAAGATCTCAGCAA
ACTTGACAGCAATGTGGGAAGTGTGGCAGTCAAGCACTGGTGCATATCCATTTCCAATCTGGCCAGGATGGTTCATGATGATGACCTGGGCAGTG
AAACTGGCTGCCCCCTTAGCTGGGTCATCCTTGGAGTTTGAGGCAACATAAC
Unigenes |
Current Unigene builds | |||||
[SGN-E370926] | SGN-U578520 | Tomato 200607 | Build 2 | 144 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T183163 [Download][View] | Facility Assigned ID: FA0AAD15CE08FM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.968 | Expected Error Rate: 0.0035 | Quality Trim Threshold: 14.5 |