EST details — SGN-E371686
Search information |
Request: 371686 | Match: SGN-E371686 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C178680 | Clone name: TUS-29-M14 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C178680 is on microarray TOM1 spot ID 1-1-3.1.4.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C72360 [cLER-1-O9] | Trace: SGN-T91893 | EST: SGN-E280339 | Direction: 5' | Facility: TIGR |
Clone: SGN-C72360 [cLER-1-O9] | Trace: SGN-T91894 | EST: SGN-E280340 | Direction: 3' | Facility: TIGR |
Clone: SGN-C178680 [TUS-29-M14] | Trace: SGN-T184014 | EST: SGN-E371685 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E371686 | Length: 592 bp (902 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E371686 [] (trimmed)
CTGCTGTTGCCACCCGCGGCAATGGTGCACAAGCTAGCATGGTTGCACCCTTCACTGGACTCAAGTCCACTGCTTCTTTCCCTGTTTCAAGGAAG
CAAAACCTTGACATTACCTCCATTGCTAGCAACGGTGGAAGAGTCAGTTGCATGCAGGTGTGGCCACCAATTAACATGAAGAAGTACGAGACTCT
GTCGTACCTTCCTGATTTGTCCGACGAGCAATTGCTCAGCGAAATTGAGTACCTATTGAAAAATGGATGGGTTCCTTGCTTGGAATTCGAGACTG
AGCACGGATTTGTGTACCGTGAGAACCATAAGTCACCAGGATACTACGATGGCAGATACTGGACCATGTGGAAGTTGCCCATGTTTGGGTGCACT
GATGCAACCCAGGTCTTGGCTGAGGTGCAGGAGGCAAAGAAGGCTTACCCTCAGGCATGGGTCCGTATCATCGGATTCGACAATGTTCGTCAAGT
GCAGTGCATCAGTTTCATCGCTTACAAGCCCGAAGGATACTAAAATGCCAATTTTTAATTATGTAATGTATAACTGACCCTATGTATTTAGGGGA
AGCTTGTTTGAATCCTCCTTAA
CAAAACCTTGACATTACCTCCATTGCTAGCAACGGTGGAAGAGTCAGTTGCATGCAGGTGTGGCCACCAATTAACATGAAGAAGTACGAGACTCT
GTCGTACCTTCCTGATTTGTCCGACGAGCAATTGCTCAGCGAAATTGAGTACCTATTGAAAAATGGATGGGTTCCTTGCTTGGAATTCGAGACTG
AGCACGGATTTGTGTACCGTGAGAACCATAAGTCACCAGGATACTACGATGGCAGATACTGGACCATGTGGAAGTTGCCCATGTTTGGGTGCACT
GATGCAACCCAGGTCTTGGCTGAGGTGCAGGAGGCAAAGAAGGCTTACCCTCAGGCATGGGTCCGTATCATCGGATTCGACAATGTTCGTCAAGT
GCAGTGCATCAGTTTCATCGCTTACAAGCCCGAAGGATACTAAAATGCCAATTTTTAATTATGTAATGTATAACTGACCCTATGTATTTAGGGGA
AGCTTGTTTGAATCCTCCTTAA
Unigenes |
Current Unigene builds | |||||
[SGN-E371686] | SGN-U578438 | Tomato 200607 | Build 2 | 819 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T184015 [Download][View] | Facility Assigned ID: FA0AAD17BG07RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.988 | Expected Error Rate: 0.0024 | Quality Trim Threshold: 14.5 |