Notice: The SGN server will be upgraded later today. SGN may be intermittently unavailable during the upgrade. We apologize for any inconvenience.

EST details — SGN-E372564

Search information 
Request: 372564Match: SGN-E372564
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C179251Clone name: TUS-31-E9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C179251 is on microarray TOM1 spot ID 1-1-8.1.2.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C77166 [cLES-20-C2] Trace: SGN-T102200 EST: SGN-E290521 Direction: 5' Facility: TIGR
Clone: SGN-C179251 [TUS-31-E9] Trace: SGN-T185020 EST: SGN-E372563 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E372564Length: 607 bp (932 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E372564 [] (trimmed) CACAAGACAAAGCACACCAATTTATTTCCTCTTTATATCAATTCTTCGACAAAATATTTCAATAATATGTTTGTAACGTTAACAGTATAGATTAG
CAAATTCAAAACTCGAAATTTATAAGCTAGTAATGTCATTACAAATACGTGAAAACAAGAGTTGAATCGTGACGTTAATTCCGTGTTACCAAATT
ACTGTTGTGCACATTGAACTCTCTGTGCACCACCATGCATGTCTTCATCGTCTTCGTCGTATGCCTCTTGGGCCTGTTGCTGCTTCCTACGCATC
TCCTCTTCGATGTTAACATCATGTAACGTGGTCTCCTCGCACTCGTCCAATTCCATATCAGTCATTTGGGTTTTGGGTTTTGGTGGCAATACTGC
TTCAAGGTTCTTGCATTGCTCGAGGGATAATGTGTCGGGGAATTCTACGGTGAAGTGAATGTATAGTTTTCCTCTCATAAATGGCCTTTGGTACA
TCGGCATTCCTTCATCATTTATGGCCTTAAATTGATCAGGTTTGACAACTTCTCCGGGTTGGGACTTGATGATCAGCTGCCTGGTATCTAGGTGA
GTCAAGATGAACTGGAAACCACACAGGGCCTCGGTTA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E372564] SGN-U578090 Tomato 200607 Build 2 217 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T185021 [Download][View] Facility Assigned ID: FA0AAD19AC05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.966 Expected Error Rate: 0.0033 Quality Trim Threshold: 14.5